K36332

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36332

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36332

Determination of introduced cDNA(s)

  • J033071H14 - Rice Full-length cDNAs - Original: J033071H14

    full reading [+] show sequence

    Nucleotide sequence: J033071H14 - full reading 
    GAGCGCGACG CCAGGGAGCG CGTAGGGAGA GAAAAGTTCG GTTCTTGAGA 
    AAGAAAGGGG AATATAAGTG AGGAGGCGAG AGCCAGAGAT AGAGAGAGAG 
    AGAGAGAGAG AGATCGGAGC AGCTAGCTAG AGCATCAAAA GCGGCCAGCC 
    ATGGCGTTGG AGGCCAGGTT CTTTTTGGCG GCCGTGTTCG CCGTCGCCGC 
    GACGTGCTTG TGCTTATCGG CGGTGGCCTC TGCTTTCGCC GTGCCGAGCG 
    TCGCCTTCGA CGAAGGGTAC TCGCCGCTGT TCGGCGACGA CAACCTCGTC 
    CGCTCGTCGG ATGATAAGAG CGTCCGCCTC TTGCTCGACC GGCGCTCCGG 
    TTCTGGGTTC ATCTCCTCGG ATTACTACCT CCACGGCTTC TTCAGCGCGT 
    CCATCAAGTT GCCCAAGGCT TACACGGCCG GCGTCGTCGT TGCCTTCTAC 
    CTGTCAAACG GGGACGTGTA CGAGAAGACG CACGACGAGC TGGACTTCGA 
    GTTCCTGGGC AGCCGTTGGG GCGGCCAGTG GCGTGTGCAG ACCAACGCCT 
    ACGGCAACGG CAGCACCGCG CGCGGCCGCG AGGAGCGCTA CCTCCTCCCC 
    TTCGACCCCA CCCTCGAGGC CCATCGCTAC TCCGTCCTCT GGGCCCCCAC 
    CCACATCATA TTCTACATCG ATGACACACC GATCAGGGAG GTGATCAGGC 
    ACCCGGGCAT GGGCGGGGAT TTCCCGTCGA AGCCGATGGC GGTATACGCG 
    ACGATCTGGG ACGGTTCGAC CTGGGCCACG GACGGCGGCA AGTACAAGGT 
    GAACTACAAG TACGCGCCGT TCGCCTCCGA GTTCTCCGAC CTGGCGCTGC 
    TCGGCTGCCG CGCCGACCCG GTGCTCCGCG CCCCGCGCGA CGGCGGCGGC 
    GCCGGGTGCG CCGAGCCCGA CCTGCTCGGC CTCCTCACGG CCGACTACGC 
    CGTCATGACC CCGCGGAAGC GCGCCGCGAT GCGCGCGTTC CGCGCGCGGC 
    ACATGACCTA CACCGTGTGC TACGACGCGG TGCGGTACGC GGCCGGGCCG 
    TTCCCGGAGT GCGACGTCTC TGACGTGGAG AAGGAGTCCT TCTCGGCGTG 
    GGGCGAGTCC AAGAACGTCG TCATGAAGGC GCGTGGCCGC GGGCGCCGCC 
    GAGGACGCAA GGCCGGCGCC GGAGCCATGT CGCGCCTCGA CGTGTCCAGC 
    AGCTGAAGTG TCAACTTGGG AAGCTAATGG CATATGATGG TTACTATTAC 
    ACTACTAGAT TCTATTAATT TTGCGGTATT GATTGATTAA TTGTAGTATG 
    GTTTTCCATG TATGTATAGT TTGTAAAGGT AGTAGGTGCT AGGGATTAAG 
    TTCGGTACCA ATTTCGACTA TTATTCTTTG ATTCGTTGGA TGGC

    Gene models with high sequence identity

    1. AT1G32170.1 [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
      E-value: 6e-92; Score: 335.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Concanavalin A-like lectin/glucanase 1.2e-80
    HMMPfam Glycoside hydrolase, family 16 1.9e-49
    HMMPfam Xyloglucan endo-transglycosylase, C-terminal 4.8e-11
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 1.4e-84

    See the detailed result >

    AT1G32170.1

    Model type
    Protein coding
    Short Description
    xyloglucan endotransglucosylase/hydrolase 30
    Curator Summary
    xyloglucan endotransglycosylase-related protein (XTR4)
    Computational Description
    xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR