K36344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36344

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36344

Determination of introduced cDNA(s)

  • J013001H10 - Rice Full-length cDNAs - Original: J013001H10

    full reading [+] show sequence

    Nucleotide sequence: J013001H10 - full reading 
    GACTCTTGCT TGCCTCTCTG CGTGATCCCG ATCTGCAGAG CTCGCCGCCG 
    GCGAGCTAAG CCCCGGAGGC GCGCGCGTGG ACGCCCCCCC CCCCCTTCTC 
    CTCCGAGCAG CGGCCACCGG TGGCCGCCGC CGCCATCTCG GTCTCGAATC 
    GAGGTGGACA GAAAAAAGTC ATCAGCTTTC TGCATGCGAT TTGGTAGATA 
    CTGACACGTC TTGATTCTGC TCAAGGAAGG CAGCTGATTG ATTGGTTGGG 
    AGGGCAAACT AAAAGGGGTG TAATCTTGGC CAATTCGATA GAAAAACACA 
    GAGATTTAGT GGCGAGAATG GATTGGCTGT CCGCGAACCT GCAGGTGAAC 
    CCTCAGGTGA CTGTCCATGG GGACTGGGTG TCAGCAGTCA TGCCGCTGAT 
    GAAGCTGCTG TGCTTGACGG TCATCGGCCT TGTGCTGTCC AACCCGAGGA 
    CGCAGATCAT CCCCAAGGCC ACCTTCAAGC TCCTGAGCAA GCTCGTCTTT 
    GCGCTGTTCC TGCCATGCCT GATCTTTGTC CACCTTGGCC AGTCGGTCAC 
    AATTCAGAAC ATCCTCGACT GGTGGTTCAT CCCGGTCAAC GTGCTCATCA 
    GCACGGCCAT CGGGTGCATT CTTGGGTACA TCGTCGCGCT GATCTGTCGC 
    CCGCCGCCGC AGTTTTTCAG GTTCACGGTG ATCATGACCG GATTTGGCAA 
    CACGGGTAAC CTCCCAATCG CGATCATCGG GTCGGTTTGC CATACCACGG 
    ATCACCCCTT TGGTCCTGGA TGCCACCGCA AGGGTGTCGC TTATGTTTCG 
    TTTGCTCAAT GGGTCGCTGT TATTCTTGTC TACACCTTGG TTTACCATAT 
    GATGGAGCCA CCGATGCAAT TCTACGAGAT TGTAGGCGAA GGGAACGAGA 
    TTGTGGAAGA GCCTGCACAG ATCAGCAACT ACAGTAGATC TCTGCTTCAT 
    GAAGCGGAAT GGCCAGGGAT GGCTGACAAA GAAACGGAGC ACTCAAAGAC 
    GCCATTCATT GCACGGGTTT TCATGAGTAT TTCAGGCTCT TCACAGAATA 
    CATTTCCTGA TATTGATTTT GCAGAAGAGG GCACTTCTGG TGCTGGACCT 
    AGCAGTCCAA AATCGCTAAG GTGTTTGGCG GAGCCAAAGG TTGTAAGGAG 
    GATCAGGGTT GTAGCTGAGA AGACTCCAAT TCAGCATGTT CTCCAGCCAC 
    CAACCATCGC CTCCTTGCTC GCCATTGTCA TCGGCATGGT TCCTTTGTTC 
    AAAGATTTTG TGTTTGTGCC TGATGCACCA CTGTCGTTCT TTACAGACAG 
    TTTGGAGATT CTAGCTCAAG CCGTTGTACC CTCGGTGATG TTAATTCTAG 
    GGGGCATGCT TGCAGAAGGA CCCAAGGATA ATGCCTTGGG TATCCGGACT 
    ATCACTGGTA TAATTGTTGC AAGGCTCCTG ATTCTCCCGT GCATTGGCAT 
    CGGTGTCGTC CTGCTGGCAG ATCGGTTGCA TCTGCTTTGT CGAGGAAGAC 
    CACATGTACC GCTTTGTGCT GTCGCTACAG TACTCCACCC CTGGTGCCAT 
    CCTGCTTGGA GCGATTGCGA GCCTCAGAGG TTATGCTGTC AAGGAAGCAT 
    CGGCACTTCT ATTCTGGCAG CACATTTGTG CGGTGCTATC TCTCTCCATC 
    TACCTGATCG TATATTTCAG GTTGCTTACC ATTTGAAAGA TGATGGTCGG 
    CCGCCTTCCA AAATTGGTTT GTAGCATTCA TCCTCGGAAG TGATTTCTAG 
    GGAGATGGGT ACTTGAATGG ATTTTCAACC ACGTCTCCTT ATGGTCAAGT 
    GTATTTATAG TATATTTAAT TTTTTTTTAG CGATTTATAT TTCAGATACA 
    TGTAGAACTT GAGAACATGA GATATGTTCT TGTCGTTCAT TAGTGTCAAT 
    ATATTGCTGT TCGCTTGCAC ATTTCTTGAT CCGATTACAG CATTACAGTT 
    GCTGCTCAAA AGTTGTACAA GTACTGCTAC ATTAGAAGTC AATATATTGC 
    TGTTTGATGC

    Gene models with high sequence identity

    1. AT1G71090.1 [+] show detail - Auxin efflux carrier family protein
      E-value: 2e-162; Score: 94.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Auxin efflux carrier 4.4e-08
    HMMPfam Auxin efflux carrier 2e-72

    See the detailed result >

    AT1G71090.1

    Model type
    Protein coding
    Short Description
    Auxin efflux carrier family protein
    Computational Description
    Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT5G01990.1); Has 749 Blast hits to 638 proteins in 173 species: Archae - 11; Bacteria - 75; Metazoa - 0; Fungi - 346; Plants - 230; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR