K36422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36422

Determination of introduced cDNA(s)

  • J033026J20 - Rice Full-length cDNAs - Original: J033026J20

    full reading [+] show sequence

    Nucleotide sequence: J033026J20 - full reading 
    GGCAGAAACC CCCGCCGCGG GAGGAGGAGA GCAGTCGCCG CAGTAGGGCT 
    TACGTCGCCG CCGACGAGCT CCATGGCGAG GGGAAAGTTC AAGGGCAAGC 
    CCACCGGGGA GCGGAGCTTC TCCAGCGAGG AGCAGATCGC TGCCGGTACT 
    TCAGCAGGTC GTCCAAAGAA CTTTAAGAAG AAGCAATCTG AAAAGGAGGT 
    ATATGATAGA AGGCAAGAAT CAGATGAGGA ATATGATAGA AGCCAAGAAT 
    CAGATGAGGA AGAATCTGAC AACTTCCAGA AGAACAAACA TAAAGGCACT 
    GAAGGTCTTA TCGAGATTGA GAATCCAAAC CTGGTGAAAC CAAAGAATAT 
    AAAAGCCAAG GACATTGATG TAAGTCAAAT ATTTGTTTCT GTTCATGATG 
    GAGGTAGTCT GGTAGCGATG CAGTTCTGAG GGGAAGAACA TTTACAGGTC 
    ACAAGTTATA TACAGAGTTA GACTGTACGT CTGCTTTAGT AATAGATTTA 
    GCTTTTTTTT GTGTCAATTC TATTGAGTGA GGTGCACAAG TGAATATTCA 
    GTAAAGTTAT GCTAGAATGA GTGATTTTAC TCCATGTACT TACCATGCCT 
    TTCAGAATGT TATCGTCCTT GTACTTCATT GTATGTGTGG GCTTTGTGAT 
    ACTGCTACTG TTATACTCTT TTCAATTAAG TGTACAAATT TGATTCATTT 
    TTGTGTTTAT ATGACTACTT GACTAATTTT GCTCTGGTAC AGATTGGTAG 
    GACATCTGAT CTCTCCAGGC GTGAAAGAGA GGAGCTTGAA AAACAGAAAT 
    CTCATGAGCG TCACATGAAG CTCCAGGAGC AAGGGAAAAC TGAACAGGCT 
    AGGAAAGATT TAGAGCGTCT TACTTTGATA CGCCAACAGA GGGCGGAAGC 
    TGCAAAGAAG CGTGAAGAGG AAAAGGCTGC CAAGGACGAG AGGAAGGCTG 
    AGGCGCGCAA GTGACCTGCC AAGCTATTGG AACAAGAAAG AATTTTGACC 
    CGAGCTGTGA TAGCTCAACG TTACCTTCCT ATGCTTCTGA ATTCTGATAT 
    CACTTGAACT CCCCTATATT TATTTACCGT AGGAATAGTA TGCAGTAGTT 
    ATGTAAAGTG GTTGTGGTCG ACCGCCACGG GTAGATGCGA CTTTTGAGCT 
    TGGAGAGGTA GTAGGAACTT GGTGGTAGCA ACTTTGGTGA ACAATTGTCT 
    ACTATTTGTC CTCATGCCGC GGTATTTTCG TTATGGTATT TTAGACTGTT 
    AATGATC

    Gene models with high sequence identity

    1. AT5G46020.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Ha...
      E-value: 3e-16; Score: 83.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR22055 9.10000425645606e-17
    HMMPfam Casein kinase substrate, phosphoprotein PP28 1.6e-23

    See the detailed result >

    AT5G46020.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR