K36432

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36432

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36432

Determination of introduced cDNA(s)

  • J033121D09 - Rice Full-length cDNAs - Original: J033121D09

    full reading [+] show sequence

    Nucleotide sequence: J033121D09 - full reading 
    CAAAGAAATT TTCTCTGTCA ATAGATGATT CCATCACCAG AAATGGCCAT 
    AGGAGGAGCA ATAATCTGCA GCGACTAATT CGAGGCAGCG TATAGCATCG 
    TGGCACGCAG AAGCTTGGGG ATACACTCTT CTTTGCCTCC GTCCAGTCCT 
    ATAAATGGTG GAGTCAGGGT GGAAGGCTAT GCATTGTGCT CATCATCTCA 
    AAGCCCTTCA TCTCCTTGTC ATCTTGAGTT GCTTGAGCTT ATAGATTTCG 
    ACAAGATGTC TTGCAGCTGT GGATCAAGCT GTGGCTGCGG CTCGAACTGC 
    ACGTGCGGAA AGATGTACCC TGACCTGGAA GAGAAGAGCA GCAGCGCCCA 
    GGCCACCGTC GTGCTCGGCG TCGCGCCGGA GAAGGCGCAC TTCGAGGCGG 
    CCGCCGAGTC CGGCGAGACC GCCCACGGCT GCGGCTGCGG CTCCAGCTGC 
    AAGTGCAACC CTTGCAACTG CTAAGAAGCC ATTTATTTGG CTATTATCAT 
    CTGTGTGATC GTGTGTCCGT GCGTGTGATG AATGAATAAT AAAGGAGCCA 
    TATCTGCTCT GGCATATGCA TAGTGCATAT GCAGTTTGTG TGATCAATCT 
    GCTGTTTCTG TCCCTGTGCT GATACGCACA CGTAGCTCCT GAAACTGTCT 
    GGTATATTAA TTTACTGGTG TGTTTGTGTG GGTGGGTGTG ATCGTATCTG 
    TATCATATCA AACCATGCAT GTATCTATCT AGTACCTATA GCTTGCTGGT 
    TC

    Gene models with high sequence identity

    1. AT5G02380.1 [+] show detail - metallothionein 2B
      E-value: 0.0000001; Score: 53.90

     

    InterPro Scan Digest

    See the detailed result >

    AT5G02380.1

    Model type
    Protein coding
    Short Description
    metallothionein 2B
    Curator Summary
    cysteine-rich protein with copper-binding activity
    Computational Description
    metallothionein 2B (MT2B); CONTAINS InterPro DOMAIN/s: Plant metallothionein, family 15 (InterPro:IPR000347); BEST Arabidopsis thaliana protein match is: metallothionein 2A (TAIR:AT3G09390.1); Has 601 Blast hits to 601 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 0; Plants - 576; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR