K36434

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36434

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36434

Determination of introduced cDNA(s)

  • J013117O04 - Rice Full-length cDNAs - Original: J013117O04

    full reading [+] show sequence

    Nucleotide sequence: J013117O04 - full reading
    GAAACAAAAA GAAAAAAGAA AAAAGAAAAG AAAAACGAAA CGAAAGCTTC 
    TTCTTCCTCC TCCCATGGAG TCGCTTGCGT CGCAAGCGAA GCCGGCGGCC
    GTGCTCTGGC TCGCCGGCTT CCTCCAGGCC GCGCGCCTCC ACCGCGTCGT
    CTCCTTCTGC GCCAGCTAGA GGCCTCTGTC GGCCAGGATC GCGCAGTGCT
    TCCTGCTCAA CGGGTTCATC TTCCTGGGGA GCTTGTTAAC CCTAAAATCG
    GTGGTCATTC CAATCCTTTC GTGGATACTG CCTGGGGATT GCAGTCAGTT
    GCAAGGGCAG CATCTGTGTG ATCACACAGT AGCTGTAGCG ACCTATTCAT
    TTCTACGCTC TGTTCTTATT CAAATATTCT ATGTATTATG GTTTTATCCA
    CTTTACATCT TCAGCTTCGT GTTGAGTACA CTTTGGTATG GACTATTGTT
    TTACCATCCT CAAGATTCCC GTATTTCATA TACTAAACAG TGGTGGGCCC
    AATTGTACCT TTTGTAACAT TGGCCATCTC ACGTCAGGTA TAATGACATT
    GCTAAGCATG CTTTGGATGT TGTGAAAAGA AAGAGCCTAG ATGCAACTAA
    AGCATTGGAT GCTCACACCA TATCTGAATC AACAGAGAAA CCTGAAGGGT
    TTGATGAGTA GGTTCACATG AAAACTCGTT GATTGCTTGT TGTTTTTACA
    TGTTCTGCAT GTTGACATGC TATTGTTAGG GTTGCAATTG GTATTGGAGA
    ACAGGTCTAT TCAATTCTTC TTTTAACTAT TTTCTTTATT GAGGTTTCAG
    TAATTGGTTA CATACCTTAC TTTGGGAAGC CTATGAATTT CCTGCTATTA
    TCTTTGATGT ATGCCTACTA CTGCTTCGAG TACAAGTGGA ACTTCTTTGC
    AGTGAGCCTG AATGAGCGGC TTGATTTCTT TGAGTCAAAT TGGGCCTTTT
    TTGCTGGATT CGGTATGTTG ATAATCATTC ATTGCATATG GTGCAAAATA
    TATGCTTTTG CCTTCTTAGG CCATGATGCC CTGCCTGTTT CAGCTTTGGA
    CTGTAATGCA AAGTGATTTT GCATTTTAAA GTTTTGATTT TTAAGAATAA
    TTTTAGGTAG ATTTTTACTT GTATTCTTAG CAATCTCGAG AAGAGAACTG
    GACAAAAGTC ACAAAGAGAA CTCCTAAAAT CCTTATGGTT ATGCAAATGT
    AATTGTTGGA AAGTAATCTA AACTATAAAC CTTTTTGTTT CTTGTGCATA
    TGTTCTTGGC AAGAAATACA TGCATCTCTA ATCGTCTTTA TGGAAAGTGT
    TGGTACTTAT GGGATCTTAA TTCTCTCAAC TTGTGGTCAT CATGCTTGGC
    AGTTAGCAGA TAAGTCATCT ATTGGAAGTA ATCCTGTACC AAGCTGAACG
    TTGAGCATTT TCTTGTAATT TTCATGGACA AATATATCTC GGATAGGTTC
    TCAGGCAGTC CTAGCTATTT GCGGCATGCA TGTTCCTTAT AAAGTTTGCA
    GGATCCTATA TAACTGACAG TTGTTGATCT GTTTTGATGT ACCTTTATAA
    ATGGCATATG TTACTATGTA ATTCTGTTTC TGTACATTCT TCGACTTACT
    CCGTGTATGC TAGCATTTAT GTGATTGACA TGTTCTTTGA TACCATTTTT
    ATATAGGTAG TCCATGTGTA CTTCCAATTT TCTTCTTCTC TCCTCTTACA
    AGTTATGGTG TAATGGCAAT ACTTTATCCA CTGGTATGGA GAAACACTCA
    CTAGCAGCAT TTTTTGTTTC CATTTAAACA GCATGCAGAC ATACTTGCTC
    TTGTAAAATA GGCATAGAAG CTAGACATGG AAAATCCCTT AAAAGCACTA
    ACTCATAATG CCATTCCCAA TTCTTATTTG GGCCAATTTG TTTGGTTCCA
    TCACAAAAAA CACAAGAGTT GGAAAATACC GTCGCACGTG TCATTGACAG
    GTGGGTCCAG ACACCACATG TCAATTGTCA TTCTTACATA TGATGTTAAA
    TTTTAACTCA TTTATCTCTA CGATGGTATT TTTCCAAATT CTCTTATTAA
    AAAGAACTCA ATCCGCAATT CTACATCCAG TCCTTTTCTC CACCGAAACT
    GGTGTGGAAA CTGGATGAGA AAAAACAGTA TCTTCCTTTG TTCCCTTCCA
    TCTAATAATA TTTCCCATCC AACATATTCT GAGTGCAGTT ATGCAATGTT
    GTCTGTTGCA GTTTGTATTG ACTGCTGCAG GTACCCAAGC AGAAAAAGTA
    ATTGATCAAC TGAAACCTTC GCATGGAGGG AAACTGCAGA GAATACCTGT
    TTTCTTCATA GCTAAGCGAC TAACGACTCA AGTGCTGCAA TTGTTTCCAG
    AGGTACACAA AGAACAATGA AAGGATCCAC ATAACCATAG CAAAGGAAAC
    AAACGCTGTG CTGGGCTTTA TCACAGTGCT GCTGTTGAAG TTACACCCGA
    AGGGTGTATA ACCAGAACTG TAAAACTGTA AATATTCCGC CATTGCGATT
    GTATATATGG GGATAAAGGG AATTAAAAAA AAAAACTATA CTTGTGCG

    Gene models with high sequence identity

    1. AT4G06676.2 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS Inter...
      E-value: 8e-64; Score: 242.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Etoposide-induced 2.4 5.40000000000002e-25
    HMMPanther Etoposide-induced 2.4 1.70000295590054e-29
    HMMPfam Etoposide-induced 2.4 3.5e-16

    See the detailed result >

    AT4G06676.2

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 261 Blast hits to 259 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 81; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR