K36442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36442

Determination of introduced cDNA(s)

  • J013062G10 - Rice Full-length cDNAs - Original: J013062G10

    full reading [+] show sequence

    Nucleotide sequence: J013062G10 - full reading 
    GATCCTCTCC TCTCGCATCG CAACTCGCGC GCACACAGAA AAAGAAAAAA 
    AGAAAGAGTC AAGGGGAGGG AAGGCGAGAG AGAGAGATGA GGGAGCCGGT 
    GGTCGTGGCA GCTTCTTCTG CGGCGGCGTT GCGGGGTTTC TGGGAGGAAG 
    TCAACGAGTC GCCGGCATGG CAGGACGGCG CCTTCTTCTC CCTCTCCGCC 
    GCATACGCCC TCGTCTCCGC ACTCGCGCTG ATTCAATTGA TCAGGATCCA 
    GCGCCGAGTG CCCGAATTCG GATGGACCAC GCAGAAGGTC TTTCACCTCA 
    TGAACTTCCT TGTCAATGGA GTCCGTGCTC TCGTCTTTGG ATTCCATCTC 
    CATGTCTTCC TTCTCTCCGC AAAAGTTTAT AAGTTGGTGC TGCTAGACCT 
    CCCCGGCTTG TTGTTTTTCT CCACCTACAC TCTGCTTGTT CTCTTCTGGG 
    CAGAAATATA CCATCAGGCC AGGAGCCTCC CAACAGATAA GTTAAGGATT 
    ATATACATAG CCGTCAATGC CATCATTTAC ACAATTCAGG TTTGTATTTG 
    GGTATACCTC GGAATCAACG ACAACCCATT GGTTGAGCTG GTCAGCAAAA 
    TCTTCATAGT AGTTGTCTCT TTTGTGGCTC TTCTTGGCTT TTCAGTATAT 
    GGTGGAAGGC TGTTCTTCTT GCTGAGACGT TTCCCCATTG AATCTAAGGG 
    GCGAAAAAAG AAGCTTTATG AGGTTGGGAC AGTGACTGCA ATCTGCTGTG 
    CTTGTTTCCT GATAAGGTGC ATAGTGGTGG CGATATCAGC ATTTGATTCT 
    GATGTATCTC TGGAGGTTTT GGACCATCCA ATTCTTGATT TCTTCTACTA 
    TATGTTGACA GAGATACTGC CTTCAGCTCT TGTCCTTTTC ATCCTCCGGA 
    AGCTCCCTCC TAAGCGGGTG TCAGCGCAGT ACCACCCAAT CAACTAGCTA 
    GAGGCCTCCT AGTTAGTTAC TACATAATAT GATGTTATTA TATACTACTG 
    TACTTAGTAT GTTAGTTATG GGAAAACTTT GAACTCCTCC CAAAAAGAAG 
    AAAGAAAACA AACTAGAATT GCGCCTGGCA AGCAGGAGCG GGATGCTGGT 
    AGTGCTTTGA GCTGTAAATG ATTGAAAGCG TCAACAAGGC CTTGTTACTT 
    GGATGGATAG TCAGCTGCTC CATTAATGAT GAATGAATTT TGGTGCTTGT 
    GTAGT

    Gene models with high sequence identity

    1. AT4G21790.1 [+] show detail - tobamovirus multiplication 1
      E-value: 2e-91; Score: 332.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G21790.1

    Model type
    Protein coding
    Short Description
    tobamovirus multiplication 1
    Curator Summary
    encodes a host factor that is required for TMV virus multiplication.
    Computational Description
    tobamovirus multiplication 1 (TOM1); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR