K36446

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36446

Determination of introduced cDNA(s)

J013149O08 - Rice Full-length cDNAs - Original: J013149O08

full reading [+] show sequence

GTGAAGAACT CGCTCCTCGT CCTCATCCAG CACAACTGCG TGCAGGCCTT 
CAATGCCCCC AGAGGAAATG GTGATAAGAC GGTAACGCAC TACCTGGCCA 
TCTTCGACAA CATCGTGCAC AGACAGCGTT TCTCAAAGTT CCTTTCTATC 
ATCCGTGCAG ACATCCCAGA GTCAGAAGCG CTGCTTGAAG GATTGCTTCA 
GAATGGTAGG CTAACATTTG GCCAACTTGT GGAGCGAACA ATTTCTAAAG 
TACCAGAAGG CAGTATCACA CCAGCAAGGG AGGAAATACG AATGAACTTC 
AACAAACTTG TATTTGCACA TTATGTGGAG CGTTGCCCGA AACCTGAACC 
TTTCTTTGAT CCACTTGTAG ATGAACAATC TACCTCGTCA AGGAAACGTG 
CTCCAAAAAC TGTCGAGATT GCTCTTTCAA TTGATAAGAA AGTTGTCAAT 
ACTGCAGCTC TTTCTGATGC AGAAAGATTT TCTGAGATCC CATACATCAT 
GGAAGATGCA TCCAATGCTA ATGATTCTCC ACGTTCTTCT ATTTCTGGTG 
CTAAGAGGAA ACATAATGCC TTAGAAGGAG ATGCAGAGCT CGATTCAACA 
ATTGCAGAGA ACGAAGTACT TTGGCGGGCA AATTTTGAGA AATTCACATT 
CTGTCTAAAG AAGAAGTTTT GTGCAGACCG AAAGAAACCT AAGTTGAAGG 
TTGGCACACA TCCTATCTGG GAAGCATTTT TCGAGGCCAG TTTAATGGAA 
AGGGACAACA ACTCTGTGAC ATCTCCAATA AATGGTATTA TGGAGAGGCT 
AGGACAGAAG GAAGGAGGTA CATCGATGAC ACTTGATCAT ATAACAAGAG 
TTTTGGAGGA GTTGAATTGT AGTCCTTCCT CAGAGGACCC AGATTCATTC 
ATTTTGGATT TAAGCAGAAT TGTTGAAGCA TCTCGAAATG AGGAGATAGA 
GTCGCTTGTG AGAAAGAAAT ACGGGCAAGA AGCTTTTACA ATTTTTAGGC 
TATTGGTCAG AGAACGCGGT CCAGTTGAGA CAGATAAAAT TATTGACACA 
ACAATTCTTG ACAAGCAGAT TGTTCATGGA ACTTTGTATA AGCTTTGGAA 
GGACGACTAC ATCGATACAG AGAGAATCCT TTCTGGAACA GGAACAGGGA 
ACACACAATA TTTTGTATGG AGAGTGAAAA ATACATTCCG GGAACAGTTC 
ATCGATAATC TATGTCATGC TGCTTTAAAC CTGCGGCAAA TGGTCAATTA 
CATAGCTGAA CTCCTACTCG AGGGCTCAAA GGATGACACA AAGTTGCGGA 
ATAGAAAAAA TATTTTGATC TTAGCCCTGA CTAGACATGA CGATTCTCTC 
ATGCTGTTTC AGGATTTTTG AAACGCTGTA GCAGGTGTTC CAGCATCTTT 
CTTCCATACT TAATCATACT TCTTTTGAGC TAGATGGTGG AATATCATAG 
TTTATTTTGC ACCCAGGCTT TTATTGGGTC AACTGGCTTA GGATTAACCA 
ACGCTTTCCC TAGGCCAATC GAACCAACCT TTCCTTTTGG CATTTCGTTT 
CAAACCAAAG TTCGGAAATG AAATCCTTTG GTATATTGGA CCCTTGTGAA 
TTTTTGTCTT TTTGTGACTA ATTAAATTTT GGTAACGTCA CATTTCGATT

Gene models with high sequence identity

AT3G49000.1 [+] show detail - RNA polymerase III subunit RPC82 family protein
E-value: 3e-62; Score: 236.00

InterPro Scan Digest

Program	Description	E-value
superfamily	"Winged helix" DNA-binding domain	2.4e-06
HMMPanther	RNA POLYMERASE III (DNA DIRECTED)-RELATED	4.3e-17
HMMPfam	RNA polymerase III Rpc82, C -terminal	5.9e-30

See the detailed result >

AT3G49000.1

Model type: Protein coding
Short Description: RNA polymerase III subunit RPC82 family protein
Computational Description: RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link: InterPro Scan - TAIR