K36505

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36505

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36505

Determination of introduced cDNA(s)

J013072F17 - Rice Full-length cDNAs - Original: J013072F17

full reading [+] show sequence

GGATCCAATT TCAACTTCCA AGTTCTGTAC TCCCAACCTT TTCCTCCTCT 
TCTTCTTTCT TCTCCTCGTC CTCCATTGAT ATGGCCACCG AGGTGCTGCG 
CCCGCACAAC GTGCTCCTGC CTTCCCCGGC GCAGCGGAGG ATCCGTGCCA 
CCGCCGCCAC GCACCAGAGG ACGGCCAACA ACCATCAGAG CGATGCGAGG 
ACCAAGCCGA CGACGGCGGG AAGCCGGAGA CGTCAGGGCA GGGGCTCCTC 
CGCCGCCAGG AAGGCGGCCG CGAGGCCTGT AGCGGTGGAG ATCGAGGGCG 
TCAAGGTGCC CGTCGACACC TCCAAGCCCA ACCCCAACGG CCTCGAGTTC 
GACAACCTCT ACCTCGACAT GAACGGGATC ATTCACCCCT GCTTCCACCC 
CGAGGATAGG CCCTCTCCGA CAACATTCGC TGAGGTTTTC CAGTGCATGT 
TTGATTATAT CGATAGGCTA TTTGTCATGG TTCGCCCTCG GAAGCTTATG 
TATATGGCCA TTGATGGTGT TGCTCCTCGT GCCAAGATGA ACCAGCAACG 
CTCTAGACGA TTCAGAGCTG CAAAAGATGC TGCTGATGCG GCCGCAGAAG 
AAGAGAGGTT GCGTGAAGAG TTTGAGAGGG AAGGCAGAAA ACTTCCACCA 
AAACAGCAAT CTCAAACATG TGATTCTAAC GTTATTACTC CAGGAACAGA 
GTTTATGGCT GTTTTATCGA TTGCTTTGCA GTACTACATC CATCTCAGGT 
TGAATTATGA TCCTGGATGG AAACAAGTTA AAGTTATTCT TTCTGATGCC 
AATGTTCCTG GTGAAGGGGA ACATAAAATT ATGTCCTACA TTCGCGGTCA 
ACGGAATCTC CCTGGATTTA ACCCAAATAC TCGCCATTGT TTGTATGGCC 
TGGATGCAGA CCTGATCATG TTAGCTCTTG CAACACACGA AGTACATTTC 
TCTATACTGA GAGAGGTAGT TTATACACCT GGACAGCAGG ACAAATGCTT 
CTTGTGTGGT CAGGTTGGAC ATCTAGCAGC AAACTGTGAA GGAAAGGTTA 
AGAGAAAAGC TGGGGAGTTT GATGAAAAAG GTGAAGCTAT TGTTCCAAAG 
AAACCTTACC AGTTCTTGAA TATATGGACC CTCCGGGAGT ACTTAGAATA 
TGAGTTCAGA ATGCAGAATC CACCTTTCCC GATTGACTTT GAACGCATCG 
TTGATGATTT CATCTTCATG TGTTTTTTTG TTGGCAATGA TTTTCTTCCA 
CATATGCCAA CATTAGAGAT TCGTGAGGGA GCTATTAACT TGCTAATGGC 
TGTATACAAG AAGGAATTTC CTTCCATGGG TGGCTATCTA ACTGATGCTT 
GCACGCCGGA TCTGAATAAA GTTGAACACT TTATTCAAGC AGTTGGCTCC 
TACGAGGATA AAATATTTCA GAAAAGAGCT CGTTTGCATC AGCGTCAAGC 
TGAAAGGATA AAACGAGAAA AGGCCCAAGC AAAACGAGGG GATGACCTGG 
ATCCCCATGT CAGGGATGAT CTTATTGTAC CTGTTGCACG CTTCCAAGGG 
TCTCGCCTTG CATCTGGACC TGTGCCTTCA CCATATGAAC AAAATGGATC 
TGACAAAAAC AATGGGGGAA AAAATAGTCG TGCTCGGAAA GCTGCACGGG 
TATCATCGTC AGGTTCAAGC ATTGCGGCTG CTATTGTTGA AGCTGAAAAT 
GACCTTGAAG CACAGGAACG CGAAAACAAG GAAGATTTGA AGACAATGCT 
TAAAGATGCA CTTCGTGAGA AATCTGATGT TTTTAATTCT GAAAATCCAG 
AGGAGGACAA GATAAAACTT GGAGAACCAG GATGGAGGGA AAGGTACTAT 
GAAGAGAAGT TTGGAGCAAG AACACCCGGG CAGATTGAAG AAATACGCAG 
AGATGTCGTT CTGAAATATA CTGAAGGTTT GTGTTGGGTA ATGCACTACT 
ATTATGAAGG TGTCTGCTCG TGGCAATGGT TTTACCCTTA CCATTATGCT 
CCTTTTGCTT CGGATTTGAG TGGTCTAGGT CAACTCAATA TAACTTTTGA 
ACTTGGGTCA CCATTCAAAC CGTTTGATCA ACTTATGGGA GTTTTCCCAG 
CTGCTAGCTC CCATGCACTC CCTGTACAGT ATCGGCAATT GATGACAGAT 
GCAAATTCAC CAATAATTGA TTTTTATCCA ACTGATTTTG AAGTAGATAT 
GAATGGGAAG AGGTATTCAT GGCAGGGGAT AGCAAAACTG CCCTTCATTG 
ATGAAGCCCG GTTGCTAGCT GAAATTAAAA AAGTTGAGCA TACTTTGACG 
CCTGAAGAAG CAAGGAGAAA CAGTATCATG TTCAATATGC TTTTTGTGAA 
TGGCTCCCAT CCACTTTCGC CTTATATCTA CTCCCTCAAC AGCAAATTTG 
GACACCTACC TGACAGAGAG CGAAATGAAA TTAAAGAAAA GATTGATCCT 
TCTTCTAGTG GAGGAATGAA TGGTTACATC TCACTTTGTA GTGGGGATCC 
GTGCCCTCCT GTCTTCAGGT CTCCTGTTGA TGGGTTGGAG GATATCATGG 
ACAATCAAGT GATATGTACA ATCTACAAGC TTCCGGATTC TCATAAGCAC 
ATCGCTCGTC CACCTGTTGG TGTAATCATA CCCAAGAAGA CTGTTGAAGC 
TACTGACCTG AAACCACCAC CTGTGCTATG GCATGAAGAC AGTGGTAGGA 
GGCCTCATGA TAATAACAAC AGGAGGCCTT ATGAAAACAG CAACAGGCAA 
AACCCAGCTG GAGCAATATC TGGCCGCCAA CTTGGGGAAG CTGCCCACCG 
ACTTGTGGTG AACAGCTTGA ATGCTCGGAG TGGCGGACAA TACAATACCC 
CATCGATGCC ATATCAAACC ATAATGAATG GCATGCCTTA TCCAAATGGG 
ATTCCACCAA GGATGGAGCA GCCTGCTCCT GGCTGGCATG TTCCTGGTGA 
TCTACCAAAT GGTCAGGTAC CACCAGCTTA TGCATCATCA TCAGGTCATT 
ATCAGAACGA TAGGTCTGGG CCTTCTCAGT ATGGACGAGA TAACCATGGA 
AGGTACCCAT ATGCAAGAGA CAACCACCAT GATTCAAGAG GAAGGGTTCC 
ACCATACCAT CAGAGCGGTG GAAACTCGTA TCAATCACAT TCTGCTCCAT 
CAGCAGGTCC TGGACGGTAT GCGCAACCCC CACCATATGC TGGGGGGTAT 
GGTAGGAGCT ACCAGCCTGC ACCGTATGGA GGTGGTCAGC AGTGGCAGCA 
GCAGCAGCAA CAACCTTATG GCTCCTATGC TGGGTCAGGG CCTTATGGGG 
GTGGGGCACC TCCTGCAAGG CCTAATTCAC GACCACAGCA GTCGCAGAAC 
CGTTACAATA CCTTAGATAG GAATTCTAAC AGGAGACCTC CACCAGGTCA 
TGGGCGACAC TAAGCCCAAC CTCTGTTTGT TGTACCTGTG GTTTTGTTGT 
TAGAAAACCT GCGTACTAAA ATAGAGAACC TCAGCCTAGT AAAACAGAGA 
ACCTCAGCTT AGAGATATAT ATAGAGCAAT TTGCATAGTC TCGTGATCGA 
CAAGCTGTTA TAGCATCAAA GGTTCTAAGA GGCATGTGTT GTACAATAGA 
ATTGTCAGTT CATCAGATAC TGGTGGCTGA CTGCCGTTTT TCATTTGTGG 
CACTCATTAT TTTAGCCCCC TAAGGTTGGG AATATGTTTA ACAAGTTTTG 
TATTTTTAAG ATAATAATGT TCTAGGTTAA ATTTCAGTTT TGGTGGATAT 
ATGTCT

Gene models with high sequence identity

AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, CCHC-type	0.0059
HMMPIR	5'-3' exoribonuclease 2	0
HMMPanther	5'->3' EXORIBONUCLEASE	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	Putative 5-3 exonuclease	1.7e-98
HMMPfam	Zinc finger, CCHC-type	0.00051
ProfileScan	Zinc finger, CCHC-type	9.521

See the detailed result >

AT1G75660.1

Model type: Protein coding
Short Description: 5'-3' exoribonuclease 3
Curator Summary: Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
Computational Description: 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
Link: InterPro Scan - TAIR