K36506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36506

Determination of introduced cDNA(s)

  • J013002C13 - Rice Full-length cDNAs - Original: J013002C13

    full reading [+] show sequence

    Nucleotide sequence: J013002C13 - full reading 
    GATTCCATTC TCCTTCCGCC GCCGCCCGCT CTCTGTTGCG CCGCAGTTGG 
    GAGCGAAACC CTTGTCTTCC TCCCAACCCA TCTTACCCAA ACCCTAAAAA 
    ACCAAAAAAA AAATCCGCAA AATTACCCCC GAAAATCCCA AAAAATATCG 
    CCGGAACCCT ATCCTTCGAT CGGATCCACC TATCCCCCTC CCCGGTGATG 
    GCGGCGCAGG TTCAGGCGGT GCCGGCGGCG GAGGGTGGTG GCGCGCCGCC 
    GCAGGCCAAC GGGGTCGTGG CTGCGGGCTC TGCTGCCGCC GCTGCGGCGA 
    CCTTCCAGGC GACGTCGCTG TACGTGGGGG ACCTCGACGT GAGCGTGCAG 
    GACGCGCAGC TGTTCGACGT CTTCAGCCAG GTCGGATCGG TGGTATCGGT 
    GCGCGTTTGC CGGGACGTCA ATACCAGGCT GTCGCTGGGT TACGCCTATG 
    TCAACTTCAG CAGTCCCGCC GATGCTGCAA GGGCATTGGA AATGCTGAAC 
    TTCACTCCTA TTAACGGGAA GCCTATCAGG ATAATGTATT CTAACCGTGA 
    CCCCAGCTCA CGTAAAAGTG GAGCAGCAAA CATATTTATT AAGAATCTTG 
    ACAAGTCAAT AGATAACAAA GCTCTCTATG ACACATTTTC TGTATTTGGG 
    AATATTCTTT CGTGTAAAGT CGCGACGGAA ATGTCTGGAG AGTCGAAGGG 
    ATATGGTTTT GTTCAGTTTG AGCTGGAAGA AGCTGCCCAG AATGCTATCA 
    GTAAGCTCAA TGGGATGCTT TTGAATGACA AAAAGGTGTA TGTAGGGCCT 
    TTTGTTCGTA AACAGGAGAG GGAAAATGTA TCAGGCAATC CCAAATTTAA 
    CAATGTGTAT GTAAAGAACC TATCGGAATC AACAACTGAA GATAATTTAA 
    AGGAAATTTT TGGTAAATTT GGACCCATAA CTAGTGTCGT TGTAATGCGT 
    GAAGGTGATG GGAAATCTAG ATGCTTTGGA TTTGTTAACT TTGAAAATCC 
    AGATGATGCT GCTCGAGCTG TTGAAGATTT GAATGGCAAG AAGTTTGATG 
    ACAAGGAATG GTATGTTTGT AGAGCACAGA AGAAGTCAGA GAGGGAGATG 
    GAATTGAAAG AAAAATTTGA GAAGAACATC AAAGAGGCAG CAGATAAGAA 
    CCAGGGAACT AACTTGTATT TGAAAAACTT GGATGATAGC ATCGATGACG 
    ATGAGAAATT AAAAGAAATT TTTGCTGATT TTGGTACTAT TACCTCTTGT 
    AAGGTCATGA GAGATTTGAA TGGTGTTAGT AAAGGATCTG GCTTTGTTGC 
    ATTTAAGTCT GCTGAAGATG CTTCACGAGC TCTTGTGGCT ATGAATGGTA 
    AGATGATTGG CAGTAAACCT CTCTATGTAG CACTTGCACA ACGCAAGGAA 
    GAAAGAAGGG CAAGGCTTCA GGCACAGTTC TCACAAATGC GTCCTATGGT 
    GATGCCTCCT TCAGTTGCTC CTCGTATGCC CATGTATCCC CCTGGTGTCC 
    CTGGTGTAGG CCAACAGCTG TTTTATGGCC AGCCACCTCC AGCTTTTGTT 
    AACCCTCAGC CTGGATTTGG CTTCCAGCAA CATCTCATTC CTGGTATGAG 
    GCCTAGTGTT GGACCAATTC CAAATTTTGT CATGCCTATG GTCCAGCAAG 
    GTCAACAACC ACAACGTCCA GCTGGAAGGC GTGCAGGCAC TGGTGGAATT 
    CAGCAACCAA TGCCAATGGG CCACCAGCAA ATGCTTCCAA GGGGTAGTCG 
    TGGTGGTTAC CGTTATGCTT CTGGTCGTGG CATGCCAGAC AATGCATTCC 
    GTGGTGTTGG AGGTTTAGTG CCATCCCCAT ATGAGATGGG AAGAATGCCT 
    CTCAGTGATG CTGGTGCACC ACCGCAGGTT CCAATTGGAG CATTGGCCTC 
    TGCACTGGCC AATTCACCCC CAGATCAGCA AAGACTGATG CTTGGTGAAA 
    GTTTATACCC GCTTGTTGAT CAGCTGGAGC ATGATCAGGC AGCGAAGGTC 
    ACTGGCATGC TTTTGGAGAT GGACCAGACT GAAGTTCTCC ATCTCATTGA 
    GTCACCTGAT GCTCTTAAGG CCAAGGTCGC TGAGGCTATG GAAGTTCTCC 
    GTAATGCTCA GCAGCAGCAG GCAAATACCC CAACTGATCA GCTAGCTGCT 
    CTCACCCTGA GCGACGGCGT CGTTTCTTAA CTTGGTTGGC ATCTTATATC 
    TGAGACTGCA AGTGATGTAG TATGTACTTG GTGTGTTTTG GAACTTGAAC 
    CTGTGGGGAA GTCTGTCTTT ATCTTTGTTA AACGGCAGTT CAGTTACTTC 
    AGCATTGTGT GGATCTGGAT TTCAGTTCCT ATTTGTGTTT TCTTAAAATA 
    TTGGGATTGC AATATGATTT ACTCTTGGAT TGATGCC

    Gene models with high sequence identity

    1. AT1G49760.2 [+] show detail - poly(A) binding protein 8
      E-value: 0; Score: 749.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther POLYADENYLATE-BINDING PROTEIN 1.7e-189
    HMMPanther RNA-BINDING PROTEIN 1.7e-189
    superfamily Polyadenylate-binding protein/Hyperplastic disc protein 6.8e-44
    superfamily RNA-binding domain, RBD 2.7e-26
    superfamily RNA-binding domain, RBD 1.6e-25
    superfamily RNA-binding domain, RBD 3.5e-24
    superfamily RNA-binding domain, RBD 4.4e-22
    HMMPfam RNA recognition motif, RNP-1 1.1e-17
    HMMPfam RNA recognition motif, RNP-1 2.5e-18
    HMMPfam RNA recognition motif, RNP-1 4.5e-25
    HMMPfam RNA recognition motif, RNP-1 4.4e-18
    HMMPfam Polyadenylate-binding protein/Hyperplastic disc protein 1.1e-27
    HMMTigr Polyadenylate binding protein, human types 1, 2, 3, 4 1.7e-279
    Gene3D Nucleotide-binding, alpha-beta plait 2.4e-23
    Gene3D Nucleotide-binding, alpha-beta plait 2.8e-23
    Gene3D Nucleotide-binding, alpha-beta plait 1e-26
    Gene3D Nucleotide-binding, alpha-beta plait 1.8e-23
    Coil coiled-coil 0
    ProfileScan RNA recognition motif, RNP-1 17.899
    ProfileScan RNA recognition motif, RNP-1 17.541
    ProfileScan RNA recognition motif, RNP-1 19.911
    ProfileScan RNA recognition motif, RNP-1 18.376
    ProfileScan Polyadenylate-binding protein/Hyperplastic disc protein 20.705
    HMMSmart RNA recognition, domain 1 0.3
    HMMSmart RNA recognition motif, RNP-1 2.1e-22
    HMMSmart RNA recognition, domain 1 7.1
    HMMSmart RNA recognition motif, RNP-1 1.5e-23
    HMMSmart RNA recognition, domain 1 0.00055
    HMMSmart RNA recognition motif, RNP-1 1.1e-29
    HMMSmart RNA recognition, domain 1 0.46
    HMMSmart RNA recognition motif, RNP-1 3.3e-23
    HMMSmart Polyadenylate-binding protein/Hyperplastic disc protein 2.1e-37

    See the detailed result >

    AT1G49760.2

    Model type
    Protein coding
    Short Description
    poly(A) binding protein 8
    Curator Summary
    polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.
    Computational Description
    poly(A) binding protein 8 (PAB8); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1).
    Link
    InterPro Scan - TAIR