K36507

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36507

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36507

Determination of introduced cDNA(s)

  • J023042H10 - Rice Full-length cDNAs - Original: J023042H10

    full reading [+] show sequence

    Nucleotide sequence: J023042H10 - full reading
    GATGAACATG AGGACCATCA TATCCCTCAT CCCAGATACA TGATCTGTAC 
    TGTCTCCTCC TCTCTAGCTT CTCTCCTCTC CCTGCTGTGC CCCTTGCTTT
    GTTGCTTGGT CAATTAGAGC TAAGCAGCAA GCTAGCTTCC TGGAAGCAAG
    GCCGGCGCCT GGCTGGGACA AGAACCACAG GAACCACAGC TGACTGATTG
    ATCAATCAAT CAATCTTCTG CTGCCCTGCT GCCTCACAGC CTCAGCAAGA
    CAATCAATTT TGGCCCTCTT GAGGCTCCGG CCGGTCGCCG ACTCGCCGTC
    GTCGAAGGTG CTCTCCGGCC GGCGGAGTTA ACATTGAGCT TGATTTCAAG
    CCGCGCTCCG ATCCGACCGG CAAAGCGCCG AAGCTGCCTT CCGTTTGTTT
    CACTCTGGTC TCTGGGGGCT CGCCATCAGC CATCCGTACC GAGCTGTAGT
    GTGCGCGGTT TTGTCGCGTC GTCGTACGTC GAGAATCCGT GAGCCAGACA
    GACAAGCCAG TGGTTTGGTG ATTCTTGCGG CGGCGCGGCG ATGGAGACCT
    TCGGCTGGGC CGGCGGCGGG CAGCTGATGC ACCACGACGA CATCTACTTG
    CCGCGCTCGG TGGGGTGCGG GCGGCCGTTC GAGCTGGACG ACGCGTTCCT
    GGGCGCGTGC TTCGGCGCCC AGCTCCAGTG CGACGGTGGC GTCGGCGGCG
    GCGACGGCGG CGGGTGTCTG CAGGGTACCT CGGGATTTGG CGCCGTGGCT
    GGAGACCCGT TGGGGTTGCT GTGCTCGGGG GACGTGTTTG CGTCTGTCGC
    CGAGGGCGCC GGCGGCGCGC ACGACGACGG CCTCCTCGAC GCGGCGCTCG
    CCTTCTCCCG GAATCAGCTC GGGGGCGCCG CCTGCGACGG GAGCGACGGC
    GGGGCCGTGT CGAACGGCGC CATGCTGTCC AGCTACAGCG GCACCACCGG
    CGGCAACATC TCCTCCGGCG AGTCGAATAA CTACAGCGGC GGCGGCGGTG
    GCTACGACGC CGATGTGGTG TCGCCGACGT CCACCATGTC CGCAGCCACA
    CAGTCGCTCC ACCCCAAGCG AAAGCTATAC GACGACCACC ACCACCCCGC
    CGGCATAGCA GCCGCAGCCG CAGCGCCACC GCTGGCGCCG TGCCCACGCC
    CCACCACCGG CGCCGTCGCC GCGAAGCGGA GGGCTTCCAC GTCAGCAACA
    AGCATCACCT TCGGCCACCA GCCGCACCAC CACCACGCGG GCGCCACCAC
    CGCCGGGTAC GAGCCTGACA TGGAAGCCAT GGCGCAGGTG AAGGAGATGA
    TCTACCGGGC GGCGGCCATG CGCCCCGTCC ACCTCGGCAC GGAGGCCGCC
    GCCGACAAGC CCCGCCGCAA GAACGTGCGC ATCTCGAGCG ACCCGCAGAC
    GGTGGCGGCG CGTCTCCGGC GGGAGCGCGT CAGCGACCGC CTCCGCGTCC
    TGCAGAAGCT GGTCCCCGGC GGCAACAAGA TGGACACGGC GTCCATGCTC
    GACGAGGCGG CCAGCTACCT CAAGTTCCTC AAGTCCCAGG TCCAAAAGCT
    GGAAACCCTA GGCACCACCA CCACCACGTC CAAGTTACCG CAGCAGTATT
    ACAGCGGCAA CATCAACAGC AGCAATAATC ACCATGGATT CCTCGGATTC
    GCAGCAAATA ACAACACCAT TTCAGCTGGC TACGCAAATT CTAATGCTGG
    AAATGCAACG AAACTGTTGT AGCACTGTGG CTAGCACAAG TACTTGATAC
    GCACAACGTA CGCGTGGTCT CGTCGTCTAT ATACATGTAG TAACATGCTG
    CTGTTTTCTA CTGTTTCTAG GCTTGGTGGT GATCAGTGTA CGTACACACG
    GCACATAATT GGAGTCTTAA TTAGTGGTGG AGTGCATGCT GATTTAGTTC
    GTGGTCATGT TCTTGTGCAA GATTTAGATT TATAATCTTC CGCTGGCGGA
    TCAGCTGCAT GGAGTGAGAA GTTACATCAA ATTAAAGGGG CCATCTGATG
    GTTCGTTCAA AAAAAAAAAA CGGGTGCCAT CTGATAGAGG AAAACATGTG
    GTTCAATAAT GGAAAAGAGT GGCCTGGACG AGCAATTTGC GAGTGG

    Gene models with high sequence identity

    1. AT3G21330.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan Helix-loop-helix DNA-binding domain 11.112
    superfamily Helix-loop-helix DNA-binding 1.2e-10
    HMMSmart Helix-loop-helix DNA-binding domain 1.3e-11

    See the detailed result >

    AT3G21330.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G00120.1); Has 2796 Blast hits to 2791 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 6; Plants - 2786; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR