K36516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36516

Determination of introduced cDNA(s)

  • J023130L12 - Rice Full-length cDNAs - Original: J023130L12

    full reading [+] show sequence

    Nucleotide sequence: J023130L12 - full reading 
    GACGCTTGCG GCCACGCGCG ATGCGACGCG ACCCGACTTT TTCCCCCCTG 
    CGCGTACGCG TGATGGCGCG TGAGGACGGA GAAGATGAGA CGGGAGGAGG 
    AGGAGGAAGA GAAGGGGCCC ATCCATTCCA TCGCCCGACG CGGCCCGCTG 
    CGGAGAAGAG GAGATCGGAT TGTACTCTAC ATGATAAGAA AGTATGGCAC 
    CAGCAAACAA AGCAGAGAGA AAAGCAGTGC TGGATGCTGG AGCATGGATG 
    TTCAACGTTG TGACATCAGT TGGTATCATC ATGGTCAACA AGGCATTAAT 
    GGCCACACAT GGTTTTAGTT TTGCTACAAC ATTGACTGGA TTGCATTTTG 
    CAACCACAAC CTTGATGACA TTAGTAATGA AATGGTTGGG ACATATTCAG 
    CCATCCTATT TACCATTGCC AGAACTCGTT AAATTCGTCT TTTTTGCAAA 
    CTTATCAATT GTTGGGATGA ATGTTAGTTT GATGTGGAAC TCTGTTGGAT 
    TCTATCAGAT TGCCAAGTTG TGTATTATTC CAGTCTTGTG CATTCTGGAA 
    ATCCTGTTTG ACAAAGTCCG TTACTCAAGG AATACAAAAC TCAGTATAGT 
    GCTTGTTTTA GTAGGAGTTG CTGTATGTAC TGTGACTGAT GTTAGTGTGA 
    ATTCAAAAGG GCTGCTAGCA GCTGTAATTG CAGTTTGGAG CACAGCACTA 
    CAGCAGCATT ACGTTCATCA CCTTCAAAAG AAGTACTCGC TTGGCTCATT 
    CAACCTATTG GGTCATACTG CTCCAGCTCA GGCAGCATCC CTGTTAATAC 
    TGGGGCCTTT TGTGGACTTC TGGCTGACCA ATAGAAGAGT TGATACTTTC 
    AATTACACAA CAATAGTTAC GTTCTTCATT GTATTGTCGT GCACAATTGC 
    TGTTGGGACC AATCTAAGCC AGTTCATATG CATTGGAAGA TTCACAGCTG 
    TCTCATTTCA AGTTCTAGGC CATATGAAGA CGATTCTTGT ATTGACCTTG 
    GGTTTTCTTT TCTTTGGAAA AGAGGGCCTT AATTTTCACG TAGTCCTTGG 
    CATGATGCTT GCTGTGATTG GCATGATTTG GTACGGGAAT GCTTCGTCAA 
    AACCGGGAGG CAAAGAGAGG CAGATTTACT CGGTGCCCAG CGAGAAAACT 
    CAGAAGTCAT CACAATCAGA GCTTGACCAG AAGGTCTGAA ACAAAGTTGT 
    TTCACTATTT TTACAGCTCC ATTGCTTAGC GAGCATTGAG AAGACCACGA 
    TCTGATTTAT TCTTTTTTTT TCTGGTAAGT TTAAAGATGT TTCTGTACAA 
    CTGAAATTCA TACCAGACAA ACAGAATATG GCAGGAACTA AGCGCGACGA 
    TAATTTAATT TGTAATATTC CATTGAGTAA CTGCATATAT GATGGAAAGA 
    TATTTTCAGC CG

    Gene models with high sequence identity

    1. AT4G09810.1 [+] show detail - Nucleotide-sugar transporter family protein
      E-value: 4e-126; Score: 448.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 4e-31
    HMMPanther SOLUTE CARRIER FAMILY 35 1e-81
    superfamily Multidrug resistance efflux transporter EmrE 0.00051
    superfamily Multidrug resistance efflux transporter EmrE 0.0031

    See the detailed result >

    AT4G09810.1

    Model type
    Protein coding
    Short Description
    Nucleotide-sugar transporter family protein
    Computational Description
    Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR