K36516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36516

Determination of introduced cDNA(s)

  • J023130L12 - Rice Full-length cDNAs - Original: J023130L12

    full reading [+] show sequence

    Nucleotide sequence: J023130L12 - full reading
    GACGCTTGCG GCCACGCGCG ATGCGACGCG ACCCGACTTT TTCCCCCCTG 
    CGCGTACGCG TGATGGCGCG TGAGGACGGA GAAGATGAGA CGGGAGGAGG
    AGGAGGAAGA GAAGGGGCCC ATCCATTCCA TCGCCCGACG CGGCCCGCTG
    CGGAGAAGAG GAGATCGGAT TGTACTCTAC ATGATAAGAA AGTATGGCAC
    CAGCAAACAA AGCAGAGAGA AAAGCAGTGC TGGATGCTGG AGCATGGATG
    TTCAACGTTG TGACATCAGT TGGTATCATC ATGGTCAACA AGGCATTAAT
    GGCCACACAT GGTTTTAGTT TTGCTACAAC ATTGACTGGA TTGCATTTTG
    CAACCACAAC CTTGATGACA TTAGTAATGA AATGGTTGGG ACATATTCAG
    CCATCCTATT TACCATTGCC AGAACTCGTT AAATTCGTCT TTTTTGCAAA
    CTTATCAATT GTTGGGATGA ATGTTAGTTT GATGTGGAAC TCTGTTGGAT
    TCTATCAGAT TGCCAAGTTG TGTATTATTC CAGTCTTGTG CATTCTGGAA
    ATCCTGTTTG ACAAAGTCCG TTACTCAAGG AATACAAAAC TCAGTATAGT
    GCTTGTTTTA GTAGGAGTTG CTGTATGTAC TGTGACTGAT GTTAGTGTGA
    ATTCAAAAGG GCTGCTAGCA GCTGTAATTG CAGTTTGGAG CACAGCACTA
    CAGCAGCATT ACGTTCATCA CCTTCAAAAG AAGTACTCGC TTGGCTCATT
    CAACCTATTG GGTCATACTG CTCCAGCTCA GGCAGCATCC CTGTTAATAC
    TGGGGCCTTT TGTGGACTTC TGGCTGACCA ATAGAAGAGT TGATACTTTC
    AATTACACAA CAATAGTTAC GTTCTTCATT GTATTGTCGT GCACAATTGC
    TGTTGGGACC AATCTAAGCC AGTTCATATG CATTGGAAGA TTCACAGCTG
    TCTCATTTCA AGTTCTAGGC CATATGAAGA CGATTCTTGT ATTGACCTTG
    GGTTTTCTTT TCTTTGGAAA AGAGGGCCTT AATTTTCACG TAGTCCTTGG
    CATGATGCTT GCTGTGATTG GCATGATTTG GTACGGGAAT GCTTCGTCAA
    AACCGGGAGG CAAAGAGAGG CAGATTTACT CGGTGCCCAG CGAGAAAACT
    CAGAAGTCAT CACAATCAGA GCTTGACCAG AAGGTCTGAA ACAAAGTTGT
    TTCACTATTT TTACAGCTCC ATTGCTTAGC GAGCATTGAG AAGACCACGA
    TCTGATTTAT TCTTTTTTTT TCTGGTAAGT TTAAAGATGT TTCTGTACAA
    CTGAAATTCA TACCAGACAA ACAGAATATG GCAGGAACTA AGCGCGACGA
    TAATTTAATT TGTAATATTC CATTGAGTAA CTGCATATAT GATGGAAAGA
    TATTTTCAGC CG

    Gene models with high sequence identity

    1. AT4G09810.1 [+] show detail - Nucleotide-sugar transporter family protein
      E-value: 4e-126; Score: 448.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 4e-31
    HMMPanther SOLUTE CARRIER FAMILY 35 1e-81
    superfamily Multidrug resistance efflux transporter EmrE 0.00051
    superfamily Multidrug resistance efflux transporter EmrE 0.0031

    See the detailed result >

    AT4G09810.1

    Model type
    Protein coding
    Short Description
    Nucleotide-sugar transporter family protein
    Computational Description
    Nucleotide-sugar transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT1G34020.1); Has 1601 Blast hits to 1598 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 311; Fungi - 204; Plants - 929; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR