K36519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36519

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36519

Determination of introduced cDNA(s)

  • J033086M14 - Rice Full-length cDNAs - Original: J033086M14

    full reading [+] show sequence

    Nucleotide sequence: J033086M14 - full reading
    GGAAGACCAG AGAGAAGACG AGAGGCGATC GCAGTGGAGT GGAGTGAAGT 
    ACTAGCAGTA TTAAAACCAG CAGCAAGCGA GAGAGAGGCC ACCAACCACT
    TCCTCCTCCA AGAAACCACC CCCACCACGA GCACGAGCAC GAGCAACCAT
    GGCGGTGGCA GAGGGAGCTG CGACTGCGAG CTACGGGCCA TGACTGCGGC
    GAGTTCTTGC TGGGTTGTTG TTGTACAAGC AGCGACGAGG AGGAGGGGAG
    CAGAGGAGGA GGAGGCGGAG GGATGGCAGC GGCGGCGGTG GGGGGAAGGG
    GGGAGAGGCT GTCGTCCTCC TCCCCGACGG CGGCGGCGCC GCAGGTGGAC
    GCCGGGAAGT ACGTCCGGTA CACGCCCGAG CAGGTGGAGG CGCTGGAGCG
    GGTGTACACC GAGTGCCCCA AGCCCAGCTC ACTCCGCCGC CAGCAGCTCA
    TCCGGGAGTG CCCCATCCTC AGCAACATCG AGCCCAAGCA GATCAAGGTC
    TGGTTTCAGA ATCGCAGATG CCGGGAGAAG CAGCGCAAGG AGGCCTCCCG
    GCTGCAAACT GTGAACCGGA AGCTGAATGC GATGAACAAG CTGTTGATGG
    AGGAAAATGA CCGGCTGCAG AAGCAGGTGT CCCGTCTCGT CTACGAGAAC
    GGCTACATGC GGACTCAACT GCACAATCCT TCTGCAGCCA CCACAGATAC
    AAGCTGTGAG TCTGTGGTGA CAAGTGGTCA GCACCATCAA CAGCAAAACC
    CAGCAGTTCT GCATCCGCAA AGGGATGCGA ACAACCCAGC AGGTCTTCTC
    GCTATTGCTG AGGAGACCTT GGCAGAGTTC ATGTCGAAGG CGACAGGAAC
    TGCTGTCGAA TGGGTGCAAA TGGTTGGGAT GAAGCCTGGT CCGGATTCCA
    TTGGAATCAT CACTGTTTCG CACAATTGCA GTGGCGTAGC AGCACGAGCT
    TGCGGCCTGG TGAGCCTTGA GCCCACAAAG GTTGCAGAGA TCCTCAAGGA
    TCGCCCCTCT TGGTACCGTG ATTGCCGATG CGTAGATATC ATCCATGTTA
    TCCCTACGGG TAACGGCGGA ACCATTGAGC TAATCTACAT GCAGACACAT
    GCACCGACAA CTTTGGCGGC ACCACGCGAC TTTTGGACTC TCCGCTACAC
    AAGTGGACTT GAAGATGGGA GTCTTGTGAT CTGTGAAAGG TCATTGACTC
    AGTCCACTGG TGGCCCATCT GGGCCTAACA CTCTGAATTT TATCAGAGCC
    GAGGTACTTC CCAGTGGTTA TCTGATTCGA CCATGTGAGG GAGGTGGCTC
    CATGATTTAC ATTGTTGATC ATGTTGATTT GGATGCTTGG AGTGTGCCTG
    AGGTTCTTCG ACCGCTCTAT GAATCTCCAA AGATCCTTGC ACAGAAGATG
    ACCATTGCAG CATTGCGACA CATTAGGCAA ATTGCGCATG AGTCAAGCGG
    TGAAATCCCC TACGGTGCTG GTCGCCAGCC CGCTGTTTTC AGGACCTTCA
    GTCAAAGGCT CAGCAGAGGT TTCAATGATG CTGTTAGTGG ATTTCCAGAT
    GATGGGTGGT CTTTGTTGAG CAGTGATGGT AGTGAGGACA TTACAATTTC
    AGTAAACTCG TCTCCAAACA AGCTTGTTGG ATCCCATGTC AGCCCGAACC
    CTCTGTTTTC TACTGTTGGA GGTGGCATCT TGTGCGCAAA GGCATCAATG
    CTACTTCAGA ATGTACCTCC TGCTCTACTT GTGCGATTTC TGAGGGAGCA
    TCGTTCTGAA TGGGCTGATC CTGGTGTTGA TGCTTATTCT GCTGCTTCTT
    TGCGAGCCAG CCCATATGCA GTTCCAGGCT TAAGGACCAG CGGGTTTATG
    GGCAGTCAGG TTATACTACC CCTCGCTCAT ACCTTAGAGC ATGAAGAGTT
    CTTGGAGGTT ATTAGGCTCG AAGGACATGG TTTCAGCCAT GATGAGGTGC
    TTCTATCACG GGATATGTAC CTTCTACAGC TTTGCAGCGG GGTTGATGAG
    AATGCTACTA GTGCATCTGC ACAGCTTGTC TTTGCTCCTA TTGACGAATC
    TTTTGCTGAT GATGCACCAC TTTTACCCTC AGGATTCCGT GTGATACCAC
    TAGATACAAA AATGGATGGG CCATCTGCAA CACGCACGCT CGACCTTGCA
    TCCGCCCTTG AGGTTGGACC AGGTGGAGCT TCGCGTGCTT CAGTTGAAGC
    ATCTGGCACA TGTAACAGAT CAGTCCTGAC CATTGCTTTC CAATTCTCAT
    ACGAGAACCA CCTTCGTGAG AGCGTGGCGG CAATGGCTAG GAGTTATGTC
    AGAGCTGTGA TGGCATCCGT GCAGAGGGTG GCTGTGGCAA TAGCTCCTTC
    TCGACTTGGA CCCCAGATCG GAATGAAGCA CCCTCCAGCC TCTCCTGAGG
    CGCTTACACT TGCTAGCTGG ATTGGTAGGA GCTATAGGGC TCACACCGGA
    GCAGATATCC GTTGGTCTGA TACCGAAGAT GCCGATTCTC CCCTGGCGCT
    CCTGTGGAAG CACAGCGACG CAATACTGTG CTGTTCTCTG AAGCCTGCTC
    CTATGTTCAC CTTCGCCAAC AATGCCGGCC TCGACATCCT TGAGACGACG
    CTGGTCAACC TCCAGGACAT CTCGCTCGAG ATGATCCTGG ATGACGAGGG
    CCGGAAGGCG CTGTGCTCGG AGTTCCCCAA GATCATGCAG CAGGGTTTCA
    CCTATCTCCC TGGAGGCGTC TGCAAGTCGA GCATGGGGCG GCAGGCATCG
    TATGAGCAGG CGGTGGCGTG GAAGGTTCTT AGCGACGACG ACGCGCCGCA
    CTGCCTCGCC TTCATGCTCG TCAACTGGAC CTTCATGTGA TCCACCATCC
    ATGGTTTCCA GCTTCCAGCT AGTGCTTTTG CTTTTGTGCC ATTGTGGCAA
    ACTGAACAAA GACCTGAATA CCACCACCGT ATTGTATTAA ACATATGCGT
    CCATACATGC ATGGTGCTTG CTTTATCCTA GCTAGTGCTA GCACCTGTGT
    GTATGGTCTC TCCATGTTTG AAGCTTAAAA TTTTAGAACC CTGGTTTTTT
    TTTTTTTCTG CTGCTGTGTG GATGAACAAG TTTCAGGACC TATGTATCTC
    TATCTATCTA TGCTAATGCT ATGAATTGTG TGATGTGTGT

    Gene models with high sequence identity

    1. AT2G34710.1 [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 15.305
    ProfileScan Lipid-binding START 26.245
    HMMPfam MEKHLA 2.1e-59
    HMMPfam Lipid-binding START 2.5e-49
    HMMPfam Homeobox 9.3e-16
    HMMSmart Homeobox 6.3e-15
    HMMSmart Lipid-binding START 7.7e-44
    superfamily Bet v1-like 8.2e-29
    superfamily Homeodomain-like 1.6e-15
    Gene3D Homeodomain-related 4e-10
    Gene3D no description 1.9e-05
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther HOMEOBOX PROTEIN 1.6e-08

    See the detailed result >

    AT2G34710.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
    Curator Summary
    Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.
    Computational Description
    PHABULOSA (PHB); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G30490.1); Has 3393 Blast hits to 3288 proteins in 275 species: Archae - 0; Bacteria - 20; Metazoa - 905; Fungi - 114; Plants - 2320; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR