K36519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36519

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36519

Determination of introduced cDNA(s)

  • J033086M14 - Rice Full-length cDNAs - Original: J033086M14

    full reading [+] show sequence

    Nucleotide sequence: J033086M14 - full reading 
    GGAAGACCAG AGAGAAGACG AGAGGCGATC GCAGTGGAGT GGAGTGAAGT 
    ACTAGCAGTA TTAAAACCAG CAGCAAGCGA GAGAGAGGCC ACCAACCACT 
    TCCTCCTCCA AGAAACCACC CCCACCACGA GCACGAGCAC GAGCAACCAT 
    GGCGGTGGCA GAGGGAGCTG CGACTGCGAG CTACGGGCCA TGACTGCGGC 
    GAGTTCTTGC TGGGTTGTTG TTGTACAAGC AGCGACGAGG AGGAGGGGAG 
    CAGAGGAGGA GGAGGCGGAG GGATGGCAGC GGCGGCGGTG GGGGGAAGGG 
    GGGAGAGGCT GTCGTCCTCC TCCCCGACGG CGGCGGCGCC GCAGGTGGAC 
    GCCGGGAAGT ACGTCCGGTA CACGCCCGAG CAGGTGGAGG CGCTGGAGCG 
    GGTGTACACC GAGTGCCCCA AGCCCAGCTC ACTCCGCCGC CAGCAGCTCA 
    TCCGGGAGTG CCCCATCCTC AGCAACATCG AGCCCAAGCA GATCAAGGTC 
    TGGTTTCAGA ATCGCAGATG CCGGGAGAAG CAGCGCAAGG AGGCCTCCCG 
    GCTGCAAACT GTGAACCGGA AGCTGAATGC GATGAACAAG CTGTTGATGG 
    AGGAAAATGA CCGGCTGCAG AAGCAGGTGT CCCGTCTCGT CTACGAGAAC 
    GGCTACATGC GGACTCAACT GCACAATCCT TCTGCAGCCA CCACAGATAC 
    AAGCTGTGAG TCTGTGGTGA CAAGTGGTCA GCACCATCAA CAGCAAAACC 
    CAGCAGTTCT GCATCCGCAA AGGGATGCGA ACAACCCAGC AGGTCTTCTC 
    GCTATTGCTG AGGAGACCTT GGCAGAGTTC ATGTCGAAGG CGACAGGAAC 
    TGCTGTCGAA TGGGTGCAAA TGGTTGGGAT GAAGCCTGGT CCGGATTCCA 
    TTGGAATCAT CACTGTTTCG CACAATTGCA GTGGCGTAGC AGCACGAGCT 
    TGCGGCCTGG TGAGCCTTGA GCCCACAAAG GTTGCAGAGA TCCTCAAGGA 
    TCGCCCCTCT TGGTACCGTG ATTGCCGATG CGTAGATATC ATCCATGTTA 
    TCCCTACGGG TAACGGCGGA ACCATTGAGC TAATCTACAT GCAGACACAT 
    GCACCGACAA CTTTGGCGGC ACCACGCGAC TTTTGGACTC TCCGCTACAC 
    AAGTGGACTT GAAGATGGGA GTCTTGTGAT CTGTGAAAGG TCATTGACTC 
    AGTCCACTGG TGGCCCATCT GGGCCTAACA CTCTGAATTT TATCAGAGCC 
    GAGGTACTTC CCAGTGGTTA TCTGATTCGA CCATGTGAGG GAGGTGGCTC 
    CATGATTTAC ATTGTTGATC ATGTTGATTT GGATGCTTGG AGTGTGCCTG 
    AGGTTCTTCG ACCGCTCTAT GAATCTCCAA AGATCCTTGC ACAGAAGATG 
    ACCATTGCAG CATTGCGACA CATTAGGCAA ATTGCGCATG AGTCAAGCGG 
    TGAAATCCCC TACGGTGCTG GTCGCCAGCC CGCTGTTTTC AGGACCTTCA 
    GTCAAAGGCT CAGCAGAGGT TTCAATGATG CTGTTAGTGG ATTTCCAGAT 
    GATGGGTGGT CTTTGTTGAG CAGTGATGGT AGTGAGGACA TTACAATTTC 
    AGTAAACTCG TCTCCAAACA AGCTTGTTGG ATCCCATGTC AGCCCGAACC 
    CTCTGTTTTC TACTGTTGGA GGTGGCATCT TGTGCGCAAA GGCATCAATG 
    CTACTTCAGA ATGTACCTCC TGCTCTACTT GTGCGATTTC TGAGGGAGCA 
    TCGTTCTGAA TGGGCTGATC CTGGTGTTGA TGCTTATTCT GCTGCTTCTT 
    TGCGAGCCAG CCCATATGCA GTTCCAGGCT TAAGGACCAG CGGGTTTATG 
    GGCAGTCAGG TTATACTACC CCTCGCTCAT ACCTTAGAGC ATGAAGAGTT 
    CTTGGAGGTT ATTAGGCTCG AAGGACATGG TTTCAGCCAT GATGAGGTGC 
    TTCTATCACG GGATATGTAC CTTCTACAGC TTTGCAGCGG GGTTGATGAG 
    AATGCTACTA GTGCATCTGC ACAGCTTGTC TTTGCTCCTA TTGACGAATC 
    TTTTGCTGAT GATGCACCAC TTTTACCCTC AGGATTCCGT GTGATACCAC 
    TAGATACAAA AATGGATGGG CCATCTGCAA CACGCACGCT CGACCTTGCA 
    TCCGCCCTTG AGGTTGGACC AGGTGGAGCT TCGCGTGCTT CAGTTGAAGC 
    ATCTGGCACA TGTAACAGAT CAGTCCTGAC CATTGCTTTC CAATTCTCAT 
    ACGAGAACCA CCTTCGTGAG AGCGTGGCGG CAATGGCTAG GAGTTATGTC 
    AGAGCTGTGA TGGCATCCGT GCAGAGGGTG GCTGTGGCAA TAGCTCCTTC 
    TCGACTTGGA CCCCAGATCG GAATGAAGCA CCCTCCAGCC TCTCCTGAGG 
    CGCTTACACT TGCTAGCTGG ATTGGTAGGA GCTATAGGGC TCACACCGGA 
    GCAGATATCC GTTGGTCTGA TACCGAAGAT GCCGATTCTC CCCTGGCGCT 
    CCTGTGGAAG CACAGCGACG CAATACTGTG CTGTTCTCTG AAGCCTGCTC 
    CTATGTTCAC CTTCGCCAAC AATGCCGGCC TCGACATCCT TGAGACGACG 
    CTGGTCAACC TCCAGGACAT CTCGCTCGAG ATGATCCTGG ATGACGAGGG 
    CCGGAAGGCG CTGTGCTCGG AGTTCCCCAA GATCATGCAG CAGGGTTTCA 
    CCTATCTCCC TGGAGGCGTC TGCAAGTCGA GCATGGGGCG GCAGGCATCG 
    TATGAGCAGG CGGTGGCGTG GAAGGTTCTT AGCGACGACG ACGCGCCGCA 
    CTGCCTCGCC TTCATGCTCG TCAACTGGAC CTTCATGTGA TCCACCATCC 
    ATGGTTTCCA GCTTCCAGCT AGTGCTTTTG CTTTTGTGCC ATTGTGGCAA 
    ACTGAACAAA GACCTGAATA CCACCACCGT ATTGTATTAA ACATATGCGT 
    CCATACATGC ATGGTGCTTG CTTTATCCTA GCTAGTGCTA GCACCTGTGT 
    GTATGGTCTC TCCATGTTTG AAGCTTAAAA TTTTAGAACC CTGGTTTTTT 
    TTTTTTTCTG CTGCTGTGTG GATGAACAAG TTTCAGGACC TATGTATCTC 
    TATCTATCTA TGCTAATGCT ATGAATTGTG TGATGTGTGT

    Gene models with high sequence identity

    1. AT2G34710.1 [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homeobox 15.305
    ProfileScan Lipid-binding START 26.245
    HMMPfam MEKHLA 2.1e-59
    HMMPfam Lipid-binding START 2.5e-49
    HMMPfam Homeobox 9.3e-16
    HMMSmart Homeobox 6.3e-15
    HMMSmart Lipid-binding START 7.7e-44
    superfamily Bet v1-like 8.2e-29
    superfamily Homeodomain-like 1.6e-15
    Gene3D Homeodomain-related 4e-10
    Gene3D no description 1.9e-05
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther HOMEOBOX PROTEIN 1.6e-08

    See the detailed result >

    AT2G34710.1

    Model type
    Protein coding
    Short Description
    Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
    Curator Summary
    Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.
    Computational Description
    PHABULOSA (PHB); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G30490.1); Has 3393 Blast hits to 3288 proteins in 275 species: Archae - 0; Bacteria - 20; Metazoa - 905; Fungi - 114; Plants - 2320; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR