K36521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36521

Determination of introduced cDNA(s)

J013000P01 - Rice Full-length cDNAs - Original: J013000P01

full reading [+] show sequence

TGGGGGGGCC GAAAAGCCTT TCAGAAGTCC AGCAAAAGCC GGCAAGGCGC 
CGCCAACGCC GCCGCCATCA TCGCCGGAGA CGATGGAGAC CGCGGTGCCA 
TGGAAAGTCC TCGAGTTCTA TAGCGGCATC GGCGGGATGA GGTACTCGCT 
GGCGGCGTCG GGCGCGCGGG CCGAGGTGGT GGAGGCCTTC GACATCAACG 
ACGTTGCCAA CGATGTCTAC GAGCTCAACT TCGGCCACCG CCCATACCAG 
GGAAACATTC AAACACTCAC TGCTAGTGAC CTAGATAAGT ATAAGGCACA 
AGCATGGCTT CTTTCTCCTC CATGCCAACC ATACACACGG CAAGGACTAC 
AGAAGCATTC AGCTGATGCT CGAGCATTTT CATTCATAAA GATTCTTAAC 
CTAATGAAAA ACATGTGCTT TCCTCCACAA ATGTTATTTG TGGAAAACGT 
AGTCGGATTT GAGGTGTCTG ATACACATGA CCAGTTGATA GAGGTTCTTT 
CAGATCTCAA TTTCAACACA CAAGAATTTA TCCTAAGCCC CTTGCAGTTT 
GGTATCCCAT ATTCTAGACC TCGCTACTTT TGTCTGGCGA AACGAGAACC 
TGTGAGTTTT CAAAATCCAT CAGACAACAG CAAGCTGCTC CGGACACCTA 
CATTCCTAAC ATTGGTAAGG GCAGGTCACA ACAGATGTAA CCAGGATTCT 
TCAGGTACAA TCTCTGACAT TAATGGGTCT GATGGATGCA CCCCAAGTGG 
AATAATTTCT CAAGATTATG TAGTCCCGCT AAACTTGATT GAGCGGTGGG 
GGAGTGCTAT GGGTATCTTT TTTTTTCTTA GTTTAAGACT CCTGAATCAA 
TCATTTAATG ATAGATTATT ATGTTTTACT GATGCTTGGC TGTGGTGTCT 
CCTCGACTGT TTGCAAGATA TTGTATGCCC TGAATCAAAA CGATGCTGTT 
GTTTTACCAA AAGTTATTAT CGCTATGTCA AGGGGACAGG CTCCTTACTA 
GCTACGTCCA ATAACCTCAA ACGAATTTCC AAAGAGGACC TTGAAATTTC 
TTCACTGAAG GAGTTAGGCT TACGATTTTT CACCCCTCGT GAGGTTGCTA 
ATCTGCATTC TTTTCCATCG AGTTTCCACT TTCCGAATCA CATAAGCCTT 
AGGCAACAGT ATGCTATGCT GGGCAATAGC CTGAGTGTAG CAGTTGTGGG 
GCCTTTGCTG CGTTATCTGT TTGCTGAGAC ATAGTGATGT TCAATCAGTT 
GGCACATGAT GCTACACAGG ACAAACACAT TGACCTTCCT TTGCCCGTGT 
TATCACCCTA AAGCCAGGTT GGTTCGTGGG TATGATTCGT GTACTCCCCG 
AAGCTGATGG TTGTGGTTCA AACCTTGCAA CCCAATTGGA GTGAATTTCC 
CACAGTGGTG CAACTTCAAC TTCATAGGGC TTGGGGACTT GTCGATTCAT 
CGGTGGGAAG AAGACAGCGT GCATGATGGC CCGGCATGTA TCGGTGAAAC 
TCTGACGCGA ATCTTACCTA GTAGAGTAGA GAAGCTTCCT CAGCATTTTC 
CCTTTGCCCC AGGCATAAGT TTTAATAATA ATGTTGAATG TTTGAGGTGT 
TACAGCATTT GACTCATGCG CATTGTGAAA CGAGGTTATT ATGGTTTAGA 
ACTGAACTTC AACTTCATGA GCTCACCATT CGACTGTCTC AAATCAGTTT 
GCTTTCTTGA TCTTTCTGCA AAGAGGCAAT ATTTTGACG

Gene models with high sequence identity

AT5G25480.1 [+] show detail - DNA methyltransferase-2
E-value: 1e-118; Score: 424.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	DNA methylase, C-5 cytosine-specific	8.2e-34
HMMPanther	DNA (CYTOSINE-5)-METHYLTRANSFERASE 2	3.8e-154
HMMPanther	DNA methylase, C-5 cytosine-specific	3.8e-154
superfamily	S-adenosyl-L-methionine-dependent methyltrans	2.3e-65
Gene3D	no description	9.4e-42
Gene3D	no description	3.7e-37
FPrintScan	DNA methylase, C-5 cytosine-specific	0.00000062
FPrintScan	DNA methylase, C-5 cytosine-specific	0.00000062
FPrintScan	DNA methylase, C-5 cytosine-specific	0.00000062

See the detailed result >

AT5G25480.1

Model type: Protein coding
Short Description: DNA methyltransferase-2
Curator Summary: Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.
Computational Description: DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR