K36527

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36527

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36527

Determination of introduced cDNA(s)

  • J033119F15 - Rice Full-length cDNAs - Original: J033119F15

    full reading [+] show sequence

    Nucleotide sequence: J033119F15 - full reading 
    GGGCTCCGAG CAAAAACCCT CGTCTTCCTA CTCCGATCGA GACCGCGTCG 
    CCGTCTCCGA GATCGCCATG GCCGGCGGCG GCGACCTCCA GAGCCCGAAG 
    AAGCGGAAGC GTGATGCGGC GGGGAAGCCC AAGACGCTGG CGAAGGGGGG 
    AGACGACGGG AAGAAGCGGA AGAGGCCCTC AGATGCCAAC ATGGCGCAAG 
    GCGGCGGCGG CGGCGAGGTC AAGGTGAAGA AGGAGCCGGT TACTGCCAAG 
    GAGAAGCGCC TGGCTGCTAA GGAAATGGCA GAGTCAAGGA AGAAGAAGAG 
    GAAACGGAAT TACAGCCTCG AGAAGGAGCT TACTGTACTA TGGGAAAAGA 
    TGCGATGCCA CAATGTGAGC AGCACGGAGA GATCTAAGCT GGTAAGTGAG 
    GCTCTCCGTA AAATGGATGG GAAATATTCA GAAATTGCTG GTTCCCACGT 
    AACTGCACGT GTTTTACAAA CATGCGTGAA GTTGTGCTCA CAATCAGAAA 
    GGGATGCGAT TTTTGAAGCC CTACAGCCAG ATTTGCTAAC TCTCTCTCTC 
    AAGAAATATG CTGTTTTCCT TGTAAAGAAG CTCATTAAGC GAGCCACTAA 
    AAAGCAGTTT GAATGGTTCA TCTCTTCTCT TCACGGTCGT GTTGCTAAAC 
    TTCTTCGTCA TACTATAGGA GCTTCAGTCG TTGACTTTGC ATATCAACTG 
    GCAACACCGC CTCAGAAAAG AAGGTTGCTA TTGGAATTGT ATTCTACTGA 
    GCTCCAGCTG TTCACTGACC TGACTGGACA GAAAACCCAC AGTTTGTTAG 
    AGACAATTTC CAACCTTGGA TTACAAAAAT CATCTGTACT GCAGCATATG 
    ACTACCGTGA TTTATCCGAT CTTGGAGAAA GGTATCGTTG AATATCCTAT 
    AGTGCACACG GCTGTATTGG AGTATTTTAC AATCGCTGAC AAGACCTCGG 
    CCACTGATGT GATTCGACAA TTTATCCCCC TTCTTACACA AGGATCATCT 
    GCCATTGATG GAGATGAGCC ATCGGTTGCC CCTGAATTAC AAAAGAAACT 
    GAAAGCTAAG AAAAAAAGGT TGACAGAGCC ACTTCTTGTT CGGATTATGA 
    ACACCAGAGA AGGATTAAAA ATAGGAGTTA GTTGCCTCAA GCATGGAAGT 
    GCAAAGGATA GGAAGAAGAT CATTAAAAGT TTGAAGGGGC ACATTATGAA 
    GCTTGCTCTT AGTGATTATG GATGCATTTT ACTTGTTGCC ATTCTTTCCG 
    TTGTTGATGA CACAAAGCTT GTTACCAAGA TCGTAATTCA AGAGCTCGCC 
    AAACATTTGA AGCAACTTAT TTTTGACAAG AATGGAAGAC GTCCATTGCT 
    GCAACTACTT CACCCTAATT GTTCACGCTA TCTGCCTCCA GCTGATCTGG 
    CTTGTCTGAA CTATCGTGTG CCTTCTCTTA TTTCAAAGGA TGAAGCTTCC 
    GAGAGTGCTG CAGAAGATAT CCCAGAGAAT AAGGTGGATG TTGCAACTAA 
    TAAGGAGCAA GATGGTTCAG AAAGCATGCA GAGTGCGTCT GACAGCAAAA 
    AGGACCCATT TCAACGGCGA CATGAATTGT TGATCAAAAG TGAACTTGCC 
    GAGGTGCTCA TCCAGACTCT CATTGAGAAT GTCGGGGAGT TACTTCGAAC 
    AAATTTTGGC AAAGATGTAT TGCATGAGGT TGCGGTTGGT GGAGAAGATA 
    ATATTCTGGA GGGCATCACT GACAGGATCC ACAGCTTGCA CAATGCAATA 
    GCTTCTGATG CAGCACGTCC AAAGGCAGAA GATACTGAAC ATGCCTTTGA 
    TAACTATCAT TCCAGCCGTC TAATCAGAAG ACTTATACTT GAATCTCCAG 
    CATTTGCTGC CATCCTATGG AAAAAAGCTC TTGAAGGCAA ATGCAAGACA 
    TGGGCTGATG GGCACAGTTC CAAGGTGGTC GCAGCATTCC TTGAATCGCC 
    CTATTCCAAG GTAAGGGATC TTGCAAAAGC TGAGCTGCAG CCGCTGGTTG 
    ATCGTGGCAT TCTGAAAATC TCAGACCATA AAGCAGTCGA AAAATGAGTT 
    TTGCACCTGA CTTCCAAGCA TCTACAGCAA TACGAGAAAT CGACAGACGA 
    ACATCCGTGC TTCTGTGTTG GATGTTTTTT TTGTAACATG AGTATGTTCT 
    GCGGAGCAAT TTTGTCACCT GTTAAAAGAG TGTAGCTACT GCTGTCACCA 
    GTGAGTGAGT ATTAACTCTC CGTAATGTTA TGTACCTTTA CAGTAAAATT 
    GCATTTATTT TGGTATGACT GCAAGATACG

    Gene models with high sequence identity

    1. AT3G16810.1 [+] show detail - pumilio 24
      E-value: 2e-153; Score: 540.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 1.4e-53
    HMMPanther UNCHARACTERIZED 8.3e-79
    ProfileScan Pumilio RNA-binding repeat 13.812
    Gene3D Armadillo-like helical 1.3e-43
    HMMSmart Pumilio RNA-binding repeat 1.9
    HMMSmart Pumilio RNA-binding repeat 1.1
    HMMSmart Pumilio RNA-binding repeat 12
    HMMSmart Pumilio RNA-binding repeat 190
    HMMSmart Pumilio RNA-binding repeat 8.7

    See the detailed result >

    AT3G16810.1

    Model type
    Protein coding
    Short Description
    pumilio 24
    Curator Summary
    Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
    Computational Description
    pumilio 24 (PUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 2337 Blast hits to 1306 proteins in 237 species: Archae - 0; Bacteria - 1; Metazoa - 1209; Fungi - 478; Plants - 404; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR