K36533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36533

Determination of introduced cDNA(s)

  • J013099D07 - Rice Full-length cDNAs - Original: J013099D07

    full reading [+] show sequence

    Nucleotide sequence: J013099D07 - full reading
    TTGGTGCTCG TGCGTAAAAG AAAGAAATCT CCCGTCTCCT CGTCGTTCCT 
    GGCGAGCAGA GCAGGAGAGG GGAGGAGATC CTGATCTGGA AGAAGAAGGA
    GCTCTTCTCC GAATTTCAGA ACCCTAAACC TCAATACAAG CAACAGTTTG
    TTTGTTCCCC CAAAGTACCC CCACCAATGT CCCAAGCTGG ATCGGAATCC
    GCCGCTGCCA AGGAGCCGTC GTTCAAGGAG GGCGAGAGAG TGCTCGCCTA
    CCACGGCCCG CTCCTCTACG AGGCCAAGGT TCAAAAGTCC GAAAACAAGG
    AGGATGAGTG GCGGTATCAT GTCCATTATC TTGGTTGGAA TAAGAGGATA
    CGAGTGAGTG CCTGGAGCCC GGATGACTGA CATATATTTA AATATGACCA
    ATCCATTTTC TACGTGTGAA TTGAAGTGAT GGCAACACAA ATTTTTTTAA
    TAGTTGTGCT GGATGAAAAA TTTCACTGAG GCCCTTGACA GTTTAAAAGT
    GTCTAAGTTG GATTTTGGAC CTTGAGTTGG ATATGAATGA CCTTATGCAT
    GTTCTAATGT ATTATTTTTT TTCTGGCAGT GCCATATTGT TGTCTACCAC
    CATGTTTGGG TAGTCTCACA TCTTTGCCCT TACGGTGCAA TTTTTTTTTC
    TTAATAGTAT TTTCATGAAT CCTGTTGAGG GGCTTGTTTC TATCATTGCA
    CTGATGCTAT TTAGTTGTCT TTCTGCTCTC CTAATTCAAG TAAACAGTCT
    TCTTAATATG TTTATTTTCA ATGAGTACAG CTGGGATGAA TGGGTCACAA
    ATGATCGCTT ACTGAAATTG ACCGACGAAA ATATCCGCAA ACAACAAGAG
    CTTGAAAAGA GCCAAGTAGT TGACAAAAGC GTAAAATCTG GACGGTCAGC
    GCAGCATAAG CCAAAAGGCT CTAATGATGC AAAAACTGAT AAAGAAGACA
    CCAAGATTAT TATCAAGGGG AAGAAACGCA AAAGTCAGCC TGGTGGGACT
    GAGGAGAAAG AAAGAAAATC ATCTGAGAGT CTCTTCATGT CACATTTTCC
    TTCAACGCTA AAAAAGCAAC TTGTTGATGA TTGGGAGTTT GTCACGCAGC
    TGGGTAAGCT TGTGAAGCTA CCTCGGTCCC CCACGGTCGA TGATATTCTA
    AAGAAGTACT TGGAGCACCG GACAAAGAAG GATAACAAGA TAAATGACTC
    TTACGCTGAG ATTTTGAAAG GATTGCGATG CTACTTTGAT AAAGCATTGC
    CTGCAATGCT TTTGTATAAG AAAGAGCGAC AGCAGTACTC TGAAGAGGTT
    AAAGGCGATG TTTCGCCCTC AACTATATGG AGCTGAGCAT CTACTGCGCC
    TTTTTGTGAA ATTGCCGGAG CTACTTGCGT CTGTCAACAT GGAAGAAGAT
    GCACTCAACA AACTACAGCA GAAATTGCTG GACATTCTCA AGTTTCTGCA
    GAAGAATCAG AGTTCGTTCT TCCTTTCTGC GTATGATGGT GGTTCTAAAG
    GTACTGATGG GATAAAGACC AAATAGAAGC AAACTGTTGC ATCTGTATGT
    TGACTGTACT TAACTGTCTC GCTGAGTAAT TTTAATTTTC ATGTGATTG

    Gene models with high sequence identity

    1. AT4G37280.1 [+] show detail - MRG family protein
      E-value: 3e-67; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 2.1e-18
    HMMPanther MRG 2.1e-18
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 0.000000000071
    HMMPanther MRG 0.000000000071
    HMMPanther TRANSCRIPTION FACTOR MRG\ALP13-RELATED 1.3e-41
    HMMPanther MRG 1.3e-41
    HMMPfam MRG 3e-30
    HMMPfam Tudor-knot 0.00000063
    HMMPfam MRG 3.3e-17
    Coil coiled-coil 0

    See the detailed result >

    AT4G37280.1

    Model type
    Protein coding
    Short Description
    MRG family protein
    Computational Description
    MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT1G02740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR