K36537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36537

Determination of introduced cDNA(s)

J013042N16 - Rice Full-length cDNAs - Original: J013042N16

full reading [+] show sequence

GGCTGACGGT CTCTGTGCAG ACTGCGCTGA CAGTTCGCTT CCGTATACCA 
GAGAGAAACC AGAAGCTGCC CAACTAGTCA AAGCTCCAGT TTCGCTTTCG 
CACAGGCAAC AGAAGCCATG GCGGAGATGA TCGCCGTGAC ACTCTCGGCG 
AAGGTCGCCG CCGCGCTGTC CGGACCCGCG GCCGTCAGGC TCTCCTCTCT 
CGCCGGGGTT CGCTCGGGCA TCGAAGCGGC GGCGCGAGAC CTGGAGCTCC 
TCCGCGCCTT CCTCCGCTTC GTCGACTCCC TCCACGGCAG CGACCCGCTC 
GCCGACGCCT GGGTTGACCA GGTGCGCGAC GTCGCCTTCG ACCTGGAGGA 
CGCCGCGGAC GAGTACGCCT TCCTCTCCGG CCACGGCTTC TTCCGCCATG 
GCGCTAACTT GGGCGCCTGG TTCGCGCTCT CCAGGCGCCT GTGGAGGTCT 
CCGCCTCGAG CTCGGGTGGC GCTGGTGGCT TGTCTGCGGC GATGATCGGT 
CGGAAGATAG CAGAGGCGTC GCACTTCGTA GAGGAGGGTG AGATCGTTGG 
TTTTGCGATG CACGAAAGGT TACTGATGAA ATGGCTGACT GGGGATACTG 
ACCCCCGGCA GCTGCTGATC GCAGTCTGCG GCATGGGCGG CGTTGGCAAG 
ACAACTCTTG TCACAAACGT GTACAAGAAA GTCGCTGCAA CCTGCCACTT 
TGATTGCGCT GCGTGGGTGG CTGTCTCCAA GAGCTTCACA ACAGACGACC 
TCCTTAGAAG AATTGCCAAG GAATTTCATC GGGATAACCG CGGCTGCGTG 
CCGTGGGACG TGGACAATAT GGACTACCGC TCGCTGGTTG AGGCTTTGCG 
TGGGCATCTC GCCAAGAAGA GGTACTTGCT TTTGCTGGAT GATGTCTGGG 
ATGCCCATGC GTGGTATGAG ATCCGTCATG CTTTTGTTGA CGATGGAACC 
AAGAGCCGGA TAATCATCAC TACACGCAGT CAGGACATTG CTTCTCTGGC 
ATCATCGAAT AGGATCATCA GACTGGAGCC ACTTTCTGAG CAGGAAGCAT 
GGTCTTTGTT TTGCAACACC ACGTTCAGGG AAGATGCAGA CCGAGAATGC 
CCATATTTAT CTGAGGCATT GGGCTTCAAA GATTCTGGAC AGATGCTGTG 
GCCTGCCATT GGCAATTGTT TCTGTTGGTA ATCTGCTTGT TTTGAAGGAT 
AGAACAGAGT TTGCCTGGAA AAGTGTATAT GACAGCCTTG TGTGGTATGA 
AAGCAGTGAT CATGGAATTG GGCAGGTGTC AAGCATACTG AATCTGAGCT 
TCGATGATCT GCCTTACCAC TTGAAGAAAT GTTTTCTGTA TTGCAGTATA 
TACCCTGAGG ATTTTATGAT AAAGAGGAAG ATTCTAATCA GAGCATGGAT 
TGCAGAAGGT TTAATCAAGG AAAAGGGACA GGGCACAATG GAGGAGGTTG 
CGGATGATTA CCTTAACCAG TTAGTGCAAC GTTCCCTGTT GCAGGCTGCT 
GTCCAGAATG AGTTTGGACG TGCAAAGCGC TGTTGCATTC ATGACCTGAT 
CAGGGAAATG ATAGTGCACA GATCAACAAA GGAAAGATTC TTTGTGTTCT 
CTAAATGCAC TGTAACATTG AAGTCAAGCA AAAAAGCCCG TCATCTTGTA 
TTTGACCGAT GCAGAAGTGA TCGTTTGTCA GCTCCCAAAA TGAACTCGCT 
TCGCTCCTTC CATGCATTTA AGGCAGATTT GGACGCCTCA CTCCTCTCTA 
GCTTTAGGTT ATTGACTGTG TTGAACTTAT GGTTCACTCC AACAGCTAAA 
CTGCCTAGTG CGGTGGCCAG TCTTCTTAAT TTGCGGTATC TTGGCATCCG 
TTCCACTCTC ATCGGTGAGC TTCCAGAGGA GTTGGGACAA TTACATAACT 
TACAAACTTT AGATGCTAAG TGGTCCATGG TACAGAGATT ACCACAAAGC 
ATAACAAAGC TCAAGAACCT GCGCCACTTG GTTTTGTATA GACGCCGATC 
TGCAGATTTC ACCTATCCAG GCCCTGGTAC GGCAATTGCG CTTCCTGATG 
GGCTGAAAAA TCTGACCTGC CTGCAGACTC TTAAATACAT TGAAGCTGAT 
GAGAAGATGG TTAGATCCTT AGGAAGCTTA AAGCACATGA GGAGCCTAGA 
GCTATGTGGT GTGCATGAGA GCAATCTTAT TCATTTGCCC TCGTCCATCT 
CCAAAATGAC TTGCCTACTG CGCTTGGGAA TTATCAGTCA GGATGCTAAT 
GTAAAATTAG ACCTGGAACC ATTCTATCCT CCACCAATAA AGCTACAAAA 
ACTTGCCTTA GCGGGGATGT TAGTAAGAGG TAAGTTACCT TCTTGGTTTG 
GCTCCCTTAA TAACCTCATG CAGTTGCGAT TGCATTCATC TAACCTCATG 
GAAGATTCAC TTGGATTGCT CTCATCGCTT CCCCGGTTGT TGCATCTTAG 
CCTTGTCAAT GCATACAGTG GGAAGAGTTT GACCTTTGCA AATGGTTATT 
TTCCAGCCCT TAAGAAACTA ACTTTGCACG ACTTGCCTAA CCTTTCTCAC 
CTGGAGTTTC AGAAGGGGAG TCTTGTAGAT CTACATGTGT TGATGCTTGG 
CCGATGTGCT CAGCTAAATA AACTACCCCA AGACATCAGG AACCTGGTAA 
ATCTTGAAAC CATGGATCTT TTTGAAATGC CAAGTGAGAT AATACAGAAT 
ATACAGAACA ATGAGATATT ACAGGAACAT AATCATGAGT CTGAGCACAC 
AATAGTAATC AAGAACATCC GTTGGAATAA TGGGAAATTG TTGGAGGAAA 
AAGTTTATAT CAACCTATCA CTATTGGAAA GTAGGCCCTT CATAGATAAA 
GAGCAGCATA ATGTAAAGTC CCAAGCTGAA ATTACTGCAG GTAGAACACA 
CAATGAATGA TCAGGTGTTC TACATATATG ACCAACACTG ACTTGCGGGC 
AGTTTATATA AGCATAAGGC AGGCTCCTTC AGTTGTCAAC AGTCTTAGCC 
TTTTAAGAGT AGAGCTTGGT GCAGCTGATG TGGTTCAGTG AGTAAATTTG 
AATGGAGACA CCTATTCTAT GATGGATTTT AATTTACCCT CTATTTTCGT 
GCCTTTAGTA GCCTTTGTAT TTCTAGCAAT TGCAATGGCT TTCTTTTATT 
TCTTTGTGGG CAGAAAAATA AGATTGTTAA GAATCGACAG GACCGATTTT 
TCTC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 5e-108; Score: 136.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Photosystem I reaction centre, subunit VIII	0.000046
HMMPfam	NB-ARC	1.5e-25
HMMPfam	NB-ARC	8.1e-44
HMMPfam	Photosystem I reaction centre, subunit VIII	0.00012
Gene3D	no description	0.00000031
Gene3D	no description	0.00000019
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.00000002
HMMPanther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	0.00000002
FPrintScan	Disease resistance protein	0.00000000033
FPrintScan	Disease resistance protein	0.00000000033
superfamily	L domain-like	3.6e-36
superfamily	P-loop containing nucleoside triphosphate hyd	0.0000000000000056
superfamily	Photosystem I reaction centre, subunit VIII	0.0000085
BlastProDom	Photosystem I reaction centre, subunit VIII	0.006

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR