K36537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36537

Determination of introduced cDNA(s)

  • J013042N16 - Rice Full-length cDNAs - Original: J013042N16

    full reading [+] show sequence

    Nucleotide sequence: J013042N16 - full reading
    GGCTGACGGT CTCTGTGCAG ACTGCGCTGA CAGTTCGCTT CCGTATACCA 
    GAGAGAAACC AGAAGCTGCC CAACTAGTCA AAGCTCCAGT TTCGCTTTCG
    CACAGGCAAC AGAAGCCATG GCGGAGATGA TCGCCGTGAC ACTCTCGGCG
    AAGGTCGCCG CCGCGCTGTC CGGACCCGCG GCCGTCAGGC TCTCCTCTCT
    CGCCGGGGTT CGCTCGGGCA TCGAAGCGGC GGCGCGAGAC CTGGAGCTCC
    TCCGCGCCTT CCTCCGCTTC GTCGACTCCC TCCACGGCAG CGACCCGCTC
    GCCGACGCCT GGGTTGACCA GGTGCGCGAC GTCGCCTTCG ACCTGGAGGA
    CGCCGCGGAC GAGTACGCCT TCCTCTCCGG CCACGGCTTC TTCCGCCATG
    GCGCTAACTT GGGCGCCTGG TTCGCGCTCT CCAGGCGCCT GTGGAGGTCT
    CCGCCTCGAG CTCGGGTGGC GCTGGTGGCT TGTCTGCGGC GATGATCGGT
    CGGAAGATAG CAGAGGCGTC GCACTTCGTA GAGGAGGGTG AGATCGTTGG
    TTTTGCGATG CACGAAAGGT TACTGATGAA ATGGCTGACT GGGGATACTG
    ACCCCCGGCA GCTGCTGATC GCAGTCTGCG GCATGGGCGG CGTTGGCAAG
    ACAACTCTTG TCACAAACGT GTACAAGAAA GTCGCTGCAA CCTGCCACTT
    TGATTGCGCT GCGTGGGTGG CTGTCTCCAA GAGCTTCACA ACAGACGACC
    TCCTTAGAAG AATTGCCAAG GAATTTCATC GGGATAACCG CGGCTGCGTG
    CCGTGGGACG TGGACAATAT GGACTACCGC TCGCTGGTTG AGGCTTTGCG
    TGGGCATCTC GCCAAGAAGA GGTACTTGCT TTTGCTGGAT GATGTCTGGG
    ATGCCCATGC GTGGTATGAG ATCCGTCATG CTTTTGTTGA CGATGGAACC
    AAGAGCCGGA TAATCATCAC TACACGCAGT CAGGACATTG CTTCTCTGGC
    ATCATCGAAT AGGATCATCA GACTGGAGCC ACTTTCTGAG CAGGAAGCAT
    GGTCTTTGTT TTGCAACACC ACGTTCAGGG AAGATGCAGA CCGAGAATGC
    CCATATTTAT CTGAGGCATT GGGCTTCAAA GATTCTGGAC AGATGCTGTG
    GCCTGCCATT GGCAATTGTT TCTGTTGGTA ATCTGCTTGT TTTGAAGGAT
    AGAACAGAGT TTGCCTGGAA AAGTGTATAT GACAGCCTTG TGTGGTATGA
    AAGCAGTGAT CATGGAATTG GGCAGGTGTC AAGCATACTG AATCTGAGCT
    TCGATGATCT GCCTTACCAC TTGAAGAAAT GTTTTCTGTA TTGCAGTATA
    TACCCTGAGG ATTTTATGAT AAAGAGGAAG ATTCTAATCA GAGCATGGAT
    TGCAGAAGGT TTAATCAAGG AAAAGGGACA GGGCACAATG GAGGAGGTTG
    CGGATGATTA CCTTAACCAG TTAGTGCAAC GTTCCCTGTT GCAGGCTGCT
    GTCCAGAATG AGTTTGGACG TGCAAAGCGC TGTTGCATTC ATGACCTGAT
    CAGGGAAATG ATAGTGCACA GATCAACAAA GGAAAGATTC TTTGTGTTCT
    CTAAATGCAC TGTAACATTG AAGTCAAGCA AAAAAGCCCG TCATCTTGTA
    TTTGACCGAT GCAGAAGTGA TCGTTTGTCA GCTCCCAAAA TGAACTCGCT
    TCGCTCCTTC CATGCATTTA AGGCAGATTT GGACGCCTCA CTCCTCTCTA
    GCTTTAGGTT ATTGACTGTG TTGAACTTAT GGTTCACTCC AACAGCTAAA
    CTGCCTAGTG CGGTGGCCAG TCTTCTTAAT TTGCGGTATC TTGGCATCCG
    TTCCACTCTC ATCGGTGAGC TTCCAGAGGA GTTGGGACAA TTACATAACT
    TACAAACTTT AGATGCTAAG TGGTCCATGG TACAGAGATT ACCACAAAGC
    ATAACAAAGC TCAAGAACCT GCGCCACTTG GTTTTGTATA GACGCCGATC
    TGCAGATTTC ACCTATCCAG GCCCTGGTAC GGCAATTGCG CTTCCTGATG
    GGCTGAAAAA TCTGACCTGC CTGCAGACTC TTAAATACAT TGAAGCTGAT
    GAGAAGATGG TTAGATCCTT AGGAAGCTTA AAGCACATGA GGAGCCTAGA
    GCTATGTGGT GTGCATGAGA GCAATCTTAT TCATTTGCCC TCGTCCATCT
    CCAAAATGAC TTGCCTACTG CGCTTGGGAA TTATCAGTCA GGATGCTAAT
    GTAAAATTAG ACCTGGAACC ATTCTATCCT CCACCAATAA AGCTACAAAA
    ACTTGCCTTA GCGGGGATGT TAGTAAGAGG TAAGTTACCT TCTTGGTTTG
    GCTCCCTTAA TAACCTCATG CAGTTGCGAT TGCATTCATC TAACCTCATG
    GAAGATTCAC TTGGATTGCT CTCATCGCTT CCCCGGTTGT TGCATCTTAG
    CCTTGTCAAT GCATACAGTG GGAAGAGTTT GACCTTTGCA AATGGTTATT
    TTCCAGCCCT TAAGAAACTA ACTTTGCACG ACTTGCCTAA CCTTTCTCAC
    CTGGAGTTTC AGAAGGGGAG TCTTGTAGAT CTACATGTGT TGATGCTTGG
    CCGATGTGCT CAGCTAAATA AACTACCCCA AGACATCAGG AACCTGGTAA
    ATCTTGAAAC CATGGATCTT TTTGAAATGC CAAGTGAGAT AATACAGAAT
    ATACAGAACA ATGAGATATT ACAGGAACAT AATCATGAGT CTGAGCACAC
    AATAGTAATC AAGAACATCC GTTGGAATAA TGGGAAATTG TTGGAGGAAA
    AAGTTTATAT CAACCTATCA CTATTGGAAA GTAGGCCCTT CATAGATAAA
    GAGCAGCATA ATGTAAAGTC CCAAGCTGAA ATTACTGCAG GTAGAACACA
    CAATGAATGA TCAGGTGTTC TACATATATG ACCAACACTG ACTTGCGGGC
    AGTTTATATA AGCATAAGGC AGGCTCCTTC AGTTGTCAAC AGTCTTAGCC
    TTTTAAGAGT AGAGCTTGGT GCAGCTGATG TGGTTCAGTG AGTAAATTTG
    AATGGAGACA CCTATTCTAT GATGGATTTT AATTTACCCT CTATTTTCGT
    GCCTTTAGTA GCCTTTGTAT TTCTAGCAAT TGCAATGGCT TTCTTTTATT
    TCTTTGTGGG CAGAAAAATA AGATTGTTAA GAATCGACAG GACCGATTTT
    TCTC

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 5e-108; Score: 136.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Photosystem I reaction centre, subunit VIII 0.000046
    HMMPfam NB-ARC 1.5e-25
    HMMPfam NB-ARC 8.1e-44
    HMMPfam Photosystem I reaction centre, subunit VIII 0.00012
    Gene3D no description 0.00000031
    Gene3D no description 0.00000019
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00000002
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.00000002
    FPrintScan Disease resistance protein 0.00000000033
    FPrintScan Disease resistance protein 0.00000000033
    superfamily L domain-like 3.6e-36
    superfamily P-loop containing nucleoside triphosphate hyd 0.0000000000000056
    superfamily Photosystem I reaction centre, subunit VIII 0.0000085
    BlastProDom Photosystem I reaction centre, subunit VIII 0.006

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR