K36543

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36543

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36543

Determination of introduced cDNA(s)

  • J013072N03 - Rice Full-length cDNAs - Original: J013072N03

    full reading [+] show sequence

    Nucleotide sequence: J013072N03 - full reading 
    GGATAAGCTT CATCGTCGAG AGGGAAACAG CCCGGATCAC CAGCTAAGGC 
    CCCTAAATGA CCGCTCAGTG ATAAAGGAGG TGGGGGTGCA AAGACAGCCA 
    GGAGGTTTGC CTAGAAGCAG CCACCCTTTA AAGAGTGCGT AATAGCTCAC 
    TGATCGAGCG CCCTTGCGCT GAAGATGAAC GGGGCTAAGC GATCTGCCGA 
    AGCTGTGGGA TGTCAAAATG CATCGGTAGG GGAGCGTTCC GCCTTAGAGG 
    GAAGCAACCG CGAAAGCGGG GGTCGACGAA GCGGAAGCGA GAATGTCGGC 
    TTGAGTAACG AAAACATTGG TGAGAATCCA ATGCCCCGAA AACCCAAGGT 
    TTCCTCCGCA AGGTTCGTCC ACGGAGGGTG AGTCAGGGCC TAAGATCAGG 
    CCGAAAGGCG TAGTCGATGG ACAACAGGTC AATATTCCTG TACTACCATT 
    TCCCCAAGGA CGTCAACCTC TGGAAGCTCA TGGGCGATTT CAATCTCCAC 
    GGCCTCACCG CCCCAGAGGA GTATGGTGGG ATGGGGCTCG GCTACATGTA 
    CCACTGCATT GCCATGGAGG AGATCAGCAG GGCGTCCGGC TCGGTCGGCC 
    TGTCTTACGG CGCTCACTCC AACCTCTGCA TTAACCAGCT GGTCCGGCAT 
    GGCAGCCCTG CCCAAAAGCT CAAGTACTTA CCAAAGCTAA TCAGTGGGGA 
    GCATGTGGGG GCATTGGCGA TGAGCGAACC CAACTCTGGT TCTGATGTTG 
    TCAGTATGAA GTGCAAAGCT GAGAAAGTAG ATGGTGGTTA TGTCATTAAC 
    GGGAATAAGA TGTGGTGCAC CAACGGGCCA TCTGCTCAGA CACTGGTTGT 
    GTATGCAAAA ACAGATATAG CTGCTGGATC AAAAGGAATA ACCGCGTTCA 
    TAATTGAGAA GGGGATGCCC GGGTTCAGTA CTGCACAGAA GTTGGACAAG 
    CTTGGCATGA GAGGAAGTGA CACATGTGAG CTTGTGTTCG AGAATTGTTT 
    TGTGCCCCAT GAAAACGTTC TCGGGGAAGA AGGGAAAGGT GTTTATGTCA 
    TGATGTCAGG GCTTGATCTA GAAAGACTTG TGTTAGCTGC AGGTCCTATC 
    GGCCTCATGC AAGCATGCCT TGATGTAGCT GTTCCTTATG TTCGCCAAAG 
    AGAGCAATTT GGCCGTCCAA TTGGTGAATT TCAGTTCATA CAGGGGAAAT 
    TGGCAGATAT GTACACCTCC TTGCAGTCAT CAAGGTCATT TGTTTACTCG 
    GTTGCTAGGG ACTGTGACAA TGGTAAAGTT GACCGCAAGG ATTGTGCTGG 
    TGTGATTCTC TTTGCTGCTG AAAGGGCAAC CCAGGTTGCA CTTCAGGCAA 
    TACAGTGTCT TGGTGGCAAC GGATACATAA ATGAGTACCC AACTGGCCGA 
    TTGCTGAGAG ATGCAAAACT GTTTGAGATT GGAGCCGGTA CTAGTGAGAT 
    AAGAAGAATG ATAATTGGCC GCGAGCTCTT CAAAGAGGAG TGAAACTATT 
    ATTTTGGAAG CCAGGTATCT GATATGTATA ACTTGGGGAG GTGAGCATGA 
    TTTGGACAAT TTGTACACAT CGTCCCTGAT GTCCTATATC TGATAATTTG 
    TCCAAGATTT GTCATGACTT TGTATATTTC CAATTTAATA AGAAATAAAA 
    TGCACCTTTC TTT

    Gene models with high sequence identity

    1. AT3G45300.1 [+] show detail - isovaleryl-CoA-dehydrogenase
      E-value: 2e-176; Score: 616.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Acyl-CoA dehydrogenase/oxidase 2.9e-76
    superfamily Acyl-CoA dehydrogenase/oxidase C-terminal 5.1e-50
    HMMPfam Acyl-CoA oxidase/dehydrogenase, type 1 4.9e-48
    HMMPfam Acyl-CoA dehydrogenase, N-terminal 3.7e-25
    HMMPfam Acyl-CoA oxidase/dehydrogenase, central domain 1.4e-19
    Gene3D Acyl-CoA dehydrogenase/oxidase, N-terminal 4e-25
    Gene3D Acyl-CoA oxidase/dehydrogenase, central domain 3.7e-35
    Gene3D Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal 2.1e-50
    PatternScan Acyl-CoA dehydrogenase, conserved site 0
    PatternScan Acyl-CoA dehydrogenase, conserved site 0
    HMMPanther ACYL-COA DEHYDROGENASE 3.1e-191
    HMMPanther ELECTRON TRANSPORT OXIDOREDUCTASE 3.1e-191

    See the detailed result >

    AT3G45300.1

    Model type
    Protein coding
    Short Description
    isovaleryl-CoA-dehydrogenase
    Curator Summary
    Encodes isovaleryl-coenzyme a dehydrogenase. Mutants have increases in 12 seed free amino acids, accumulation of seed homomethionine and 3-isovaleroyloxypropyl-glucosinolate, with a concomitant decrease in seed 3-benzoyloxypropyl-glucosinolate.
    Computational Description
    isovaleryl-CoA-dehydrogenase (IVD); FUNCTIONS IN: isovaleryl-CoA dehydrogenase activity, ATP binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 4 (TAIR:AT3G51840.1); Has 45583 Blast hits to 45129 proteins in 2067 species: Archae - 559; Bacteria - 29477; Metazoa - 1687; Fungi - 835; Plants - 308; Viruses - 0; Other Eukaryotes - 12717 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR