K36607

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36607

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36607

Determination of introduced cDNA(s)

  • J013001F11 - Rice Full-length cDNAs - Original: J013001F11

    full reading [+] show sequence

    Nucleotide sequence: J013001F11 - full reading 
    GTAGCTTACA GCTCACAGCA ATCAGCTAAG CCAGTAGCCA ATCCTCACTC 
    ACTACTCATC TTCTCTTCCC ATCTTTGTTG CTTGCATTCA GAGATCATCC 
    AATCGGCCAT GGCTGATGAA ATCCAGCATC TGACCAGGGC CTTCTCAGGG 
    CTCGGTGGCC TCGGCGTGGA CGAGCCGGCG ATGGTGTCGG CGCTGGCCAA 
    GTGGCGCAGG CAGCCGGAGA AGCTGTCCGG GTTCAGGAAG AGCTTCAATG 
    GCTTCTTCAA GGATCATGGC GGCGTCATCG AGAAGTGCGA GGAGGAGTAC 
    ATGCTCCACC TCGCCGCCGA GTTCTCGCGG TTCAAGAACC TGATGGTGAT 
    GTGGGCGATG CACCCGTGGG AGCGCGACGC GCGGCTGGCG CACCACGTGC 
    TCCACCAGGC GCACCCGGCG GCCATCGTCG TGGAGATCGC TTGCACCCGG 
    ACGGCGGAGG AGCTCCTCGG CGCTCGCAAG GCGTACCAGG CGCTGTTCCA 
    CCACTCCCTC GAGGAGGACG TCGCCTACCG CGCCAGGGAC AAGCCCTACT 
    GCGGCCTGCT GGTCGGGCTG GTGAGCGCGT ACCGGTACGA GGGCCCGAGG 
    GTGAGCGAGG AGACGGCGCG CGCGGAGGCG AAGGCGCTCG TCGCCGCGGT 
    GAAGAGCGCC GGCCACGCGG CGGCGAAGCT GGTGGAGAAC GACGACGTCG 
    TCAGGATCCT CACCACCCGG AGCAAGCCGC ACCTCGTCGA GACCTTCAAG 
    CACTACAAGG AAATCCATGG CCGCCACATC GAAGAGGATC TTGGGCACGA 
    GGAGACACTG AGGGAGGCGG CGCTGTGCCT GGCGACGCCG GCGAGGTACT 
    TCAGCGAGGT GGTGGCGGCG GCGGTGAGCG ACGGCGCCGA CCACCACGCG 
    AAGGAGGCGC TGACGCGGGT GGCGGTGACG CGGGCGGACG TGGACATGGA 
    CGCCATCCGC GCGGCCTACC ACGAGCAGTT CGGCGGGAGG CTGGAGGACG 
    CCGTCGCCGG GAAGGCGCAC GGCTACTACA GAGACGCGCT CCTCTCGCTC 
    GTCGCCGGCG GCAAGTGACC CGGCCGATCA GCCATTGCTC CTCCGATCTG 
    TCGCCTCGCC TTGTCAGTGC GTCGCCATCG TGTACGTTGT TGCTGCTGCT 
    GTTGTTGTTG TTGTGTTTTT GTTGCATGCG TGGATCGAGA CTTGTAAACT 
    TAGCATTTCG CAGCAGAGCT GTTGGTATGG AATAAGGTCG ATTTAATTTT 
    TCTT

    Gene models with high sequence identity

    1. AT2G38750.1 [+] show detail - annexin 4
      E-value: 3e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Annexin 1.8e-58
    HMMSmart Annexin repeat 0.52
    HMMSmart Annexin repeat 0.013
    HMMSmart Annexin repeat 7.9e-07
    HMMPfam Annexin repeat 1.6e-05
    HMMPfam Annexin repeat 1e-10
    HMMPfam Annexin repeat 2.4e-10
    Gene3D Annexin repeat 2.2e-06
    Gene3D Annexin repeat 1e-08
    Gene3D Annexin repeat 5.4e-10
    HMMPanther Annexin like protein 7.1e-80
    HMMPanther Annexin 7.1e-80

    See the detailed result >

    AT2G38750.1

    Model type
    Protein coding
    Short Description
    annexin 4
    Curator Summary
    Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis.
    Computational Description
    annexin 4 (ANNAT4); FUNCTIONS IN: calcium-dependent phospholipid binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cell surface; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin (InterPro:IPR001464); BEST Arabidopsis thaliana protein match is: annexin 8 (TAIR:AT5G12380.1); Has 2371 Blast hits to 2094 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 1728; Fungi - 90; Plants - 415; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR