K36615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36615

Determination of introduced cDNA(s)

  • J033025G07 - Rice Full-length cDNAs - Original: J033025G07

    full reading [+] show sequence

    Nucleotide sequence: J033025G07 - full reading 
    GTGGACCGAG GAGGCTTACC TGGACATCGC CGACAAGATG GTCGGCGAGT 
    TCCCTGAGCT TGCGCTCATG GGCTCTTGTG TTCTTGCCAT GCTCATGAAA 
    GGAGAGGACA TGTACATCAT GAATGTTGGC GATAGCCGGG CTGTGTTGGC 
    AACAATGGAC AGCGTCGATC TCGAGCAGAT CAGCCAGGGT TCATTCGATG 
    GATCAGTCGG GGATTGCCCG CCATGCTTGT CGGCCGTGCA GCTCACGTCG 
    GATCACAGCA CTTCAGTGGA AGAGGAAGTA ATCAGAATAC GAAACGAGCA 
    TCCTGATGAT CCATCTGCCA TCTCCAAGGA TCGCGTGAAG GGCTCGCTGA 
    AGGTGACCAG AGCATTTGGT GCTGGGTTTT TGAAACAGTC CAAGTGGAAT 
    GATGCACTCC TGGAGATGTT CAGAATTGAT TACGTTGGGT CCTCCCCATA 
    CATATCATGC AATCCATCCC TTTTTCATCA TAAGCTCAGC ACAAGGGATA 
    GATTCTTGAT ATTATCTTCA GATGGACTTT ACCAGTATTT CACCAACGAG 
    GAGGCAGTTG CTCAGGTCGA AATGTTCATC GCAACAACCC CTGAAGGCGA 
    CCCTGCCCAA CATCTTGTGG AGGAAGTTCT TTTCCGTGCT GCCAACAAAG 
    CAGGAATGGA CTTTCATGAA CTGATCGAGA TACCACATGG TGATCGTCGG 
    CGATACCATG ACGATGTATC TGTCATCGTC ATCTCTTTGG AGGGCAGGAT 
    TTGGAGATCC TGCGTGTAAA TAGAAACAAT AGTAGGCTAG TGAAACAAAA 
    CGTATAGAGG GGGTTCTTCC CATGCCTTCC TTGAGCTGAG AGGTGTTCTT 
    GCGGCTACTC TACTCCTCTT CCCCCAGTTG CTACTGTACA ATATCAACCA 
    AGCACTGTGG GGGGTTGGAT TCGGGGCTCT CGGCACATCC AGCTGAATCG 
    CCATGAATCG CCCGCAGGGC TGGCCGCGTG GTATAATATG TTGATGTAAA 
    TGAGGATTTG TTCAATTATT AATAATTTAT AAAATCGACC AATTGGTCAA 
    CTTTCTTTG

    Gene models with high sequence identity

    1. AT1G07630.1 [+] show detail - pol-like 5
      E-value: 8e-106; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Histidine triad (HIT) protein 9.026
    superfamily Protein phosphatase 2C-related 6.3e-38
    HMMPfam Protein phosphatase 2C, N-terminal 4.3e-31
    HMMSmart Protein phosphatase 2C-related 1.5e-28
    HMMPanther PROTEIN PHOSPHATASE-2C 5.8e-104
    HMMPanther Protein phosphatase 2C 5.8e-104
    Gene3D Protein phosphatase 2C-related 3.8e-34

    See the detailed result >

    AT1G07630.1

    Model type
    Protein coding
    Short Description
    pol-like 5
    Curator Summary
    Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves.
    Computational Description
    pol-like 5 (PLL5); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation, leaf development; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: poltergeist like 4 (TAIR:AT2G28890.1); Has 2889 Blast hits to 2855 proteins in 251 species: Archae - 0; Bacteria - 18; Metazoa - 486; Fungi - 220; Plants - 1762; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR