K36621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36621

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36621

Determination of introduced cDNA(s)

J023109L04 - Rice Full-length cDNAs - Original: J023109L04

full reading [+] show sequence

GACTCCGCGC CGTCGCCAGC AGCCGCCGCC GCTGCCTCTC CTCCTCCTCC 
CCTCGCCGCC GATCCAGTCC GGTCACTTTC AGTCTTTTTT CTTGAGGGGG 
AGATGGCGGT TTCTTTCACC AACGTTAGCT CAGAGGCAGG CCTCAAAAAG 
CTCGATGAGT ACCTTCTCAC TCGCAGCTAC ATCTCTGGGT ACCAAGCCTC 
CAACGATGAC TTGGCTGTGT ACTCTGCATT TTCAACTGCG CCCTCTTCAA 
GCTATACCAA TGTTGCTAGG TGGTTTACTC ACATTGATGC ACTCCTACGT 
CTGAGTGGAG TTACTGCTGA TGGTCAAGGC GTAAAGGTCG AGTCGACAGC 
TGTTCCTTCA GCTTCAACCC CTGATGTTGC TGATGCAAAG GCTCCTGCAG 
CTGATGATGA CGATGATGAC GATGTTGACC TTTTTGGTGA GGAGACTGAA 
GAGGAGAAGA AGGCAGCTGA GGAGCGTGCT GCTGCTGTCA AGGCTTCTGG 
CAAGAAGAAG GAATCTGGGA AGTCCTCAGT GTTGCTTGAT GTCAAACCAT 
GGGACGATGA GACTGACATG ACCAAATTGG AAGAAGCTGT GAGGAATGTT 
AAGATGGAAG GCCTCCTTTG GGGCGCATCC AAGCTTGTCC CGGTTGGTTA 
CGGTATCAAG AAATTGCAAA TCATGATGAC CATTGTCGAT GATCTTGTGT 
CGGTTGATAG TCTGATTGAG GACTACTTCT ACACCGAACC AGCGAATGAG 
TACATCCAGA GCTGCGACAT TGTTGCGTTC AACAAGATCT AGATCTTCCT 
TGAGTCAGGT GATGGCGATC GGTGCACAAA GATAAAAAGA AAAATCCGGA 
AGTTTGAATT ACCGTTGATA CTTCAATCTA GAAGTTTGAA TTACCATTGA 
TGTGTCGTTC GTGGTGTCAA CTAGTACTTG AGCCCGTTTT GTGTTGAGAT 
TGTAGCACTC TACTTCTACT GAGATCGTTT TCTCCTCCTT TAATGTTTAA 
AGACCAATCA GGTTATTATT ACTGTGTCTG CCTGTGTCAC CATAGCGGCA 
TTGTTGGTCG ATCCAGTTTT GATGCGGTCT TCAATTCTCC CGTCTTTCGC 
TTTGCTTGAT TGCTTCATCG CTTTTGCGGC TAAAGTTTTT CTGCTCCTAC 
CAAAACTGTA GGGGAAACTT TGGTTGTGCT GTTTGTTCTA TCTCTTATGC 
ATTGCGCAGC CTGGTTTTTT CGCTCTTCTG AAGTATAGCC CTGTGCGCTC 
TCATCAGGCC TGTCCTGAAA TACGTGATTT CCGTTCGGTA TCGATGTTCG 
GTTTGTCACA CATATCTTCT ACTTTCTTTT CTGTAATGAA GAGCATTGTC 
TACTGTTATC ACCT

Gene models with high sequence identity

AT1G30230.2 [+] show detail - Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
E-value: 1e-61; Score: 234.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ELONGATION FACTOR 1-BETA	6.9e-142
HMMPanther	ELONGATION FACTOR 1-BETA	6.9e-142
PatternScan	Translation elongation factor EF1B, beta/delta chains, conserved site	0
PatternScan	Translation elongation factor EF1B, beta/delta chains, conserved site	0
Gene3D	Translation elongation factor EF1B/ribosomal protein S6	4.6e-38
HMMPfam	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange	5.8e-31
HMMSmart	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange	7.2e-34
superfamily	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange	2.1e-32
Coil	coiled-coil	0

See the detailed result >

AT1G30230.2

Model type: Protein coding
Short Description: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6
Computational Description: Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: plasma membrane, eukaryotic translation elongation factor 1 complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (InterPro:IPR014038), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Translation elongation factor EF1B, beta/delta chains, conserved site (InterPro:IPR001326); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B/ribosomal protein S6 family protein (TAIR:AT2G18110.1); Has 1008 Blast hits to 1006 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 526; Fungi - 158; Plants - 163; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link: InterPro Scan - TAIR