K36627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36627

Determination of introduced cDNA(s)

  • J013099F15 - Rice Full-length cDNAs - Original: J013099F15

    full reading [+] show sequence

    Nucleotide sequence: J013099F15 - full reading 
    AGTAGTGGGA AATTAGTGTT ATTGGACAAG CTGTTGGTAA GACTGCGGGA 
    GACTAATCAT CGTGTGCTTA TCTTCTCTCA GATGGTTAGG ATGTTGGACA 
    TCCTTGCTGA GTATCTATCC CTCCGAGGAT TCCAGTTTCA GAGGCTTGAT 
    GGCAGTACGA GAGCAGATCT TCGTCACCAG GCCATGGAGC ATTTTAATGC 
    TCCTGGAAGT GATGACTTCT GTTTTCTTCT GTCTACACGT GCTGGTGGGC 
    TTGGTATTAA TCTTGCAACA GCAGATACCG TGATCATTTT TGATTCAGAC 
    TGGAATCCGC AAAATGATTT ACAGGCAATG AGTAGGGCAC ACAGGATTGG 
    GCAACAAGAA ACTGTTAACA TATATCGTTT CGTGACATGC AAAAGTGTTG 
    AAGAGGATAT ATTGGAACGT GCAAAGAAAA AAATGGTTCT TGATCACCTA 
    GTGATTCAGA AGCTAAATGC TGAGGGCAGG CTCGAGAAGA AAGAATCAAA 
    AAAAGGTGGT TCCATGTTTG ACAAGAATGA ACTTTCAGCG ATATTGAGAT 
    TTGGAGCAGA AGAGTTATTC AAAGAAGATA AGACTGATGA AGAGACCAAG 
    AAGAAGCTTG AAAGCATGGA CATTGATGAA ATTCTCGAGA GAGCTGAGAA 
    AGTTGAAACA AAGGGTGGTG AAGGGGAGGA AGGAAATGAA CTTCTTAGTG 
    CATTCAAGGT TGCCAACTTT TCTAGTGGTG AGGATGATGC CACATTCTGG 
    AGCAGATTAA TTCAACCAGA TGCTTCAGAT ATGGTTGAGG AGACTTTAGC 
    ACCTCGTGCT GCAAGAAATA AGAAGAGCTA TGTTGAAGAT CACCAACTTG 
    ATAAGAATAG CAACAGGAAA AGGCGAGGAA TCGATGCACA AGAAAAGCCA 
    AGGAGGCGTT CTAGCAGAAC AATGGACACA GCTGTGTCAT TACCACTCAT 
    AGATGGTTCA GCACATCAAG TACGAGAATG GTCATTTGGA AATTTGTCAA 
    AGAAAGATGC TACCCGATTT GTTCGAGCGG TTAAAAAATT TGGAAACCCA 
    AGCCAAATTG GGTTAATCGT GGATGATGTT GGTGGTGCAA TAGCAAAGTC 
    TTCGGTTGAT CAACAGCTTG AGCTGTTTAC TCTACTCATT GAGGGTTGTC 
    AAGATGCTGT TAAAAATAAT ATGGATGCCA AGGGCACAGT GTTGGATTTT 
    TTTGGTGTAG CAGTTAAGGC GCATGAGTTG ATAGCCCGTG TGGAAGAGCT 
    ACAGTTCCTG GCAAGGCGCA TTGCACGTTA CAAAGATCCA GTTAGACAAT 
    ACCGGATCCA GGCACCTTAC AAAAAGCCAC AGTGGTCAGC AAGCTGTGGT 
    TGGACTGAAA CTGATGATGC AAGATTGATG GTTGGAATTC ATTGGTATGG 
    CTATGGAAAT TGGGAGAAGA TACGATTAGA TCCAAAACTT AGCTTGACAG 
    CGAAAATTGC ACCAGCAACC CTTGGTGAAC GAGAGACGTT TTTACCGCGT 
    GCACCGAACT TGGATAATCG TGCTAGTGCT CTTCTACAAA AGGAATTTGC 
    CAATCTTCGT GGTAAGAGCT CGAAAGCCAA GGGAGGTCCT CGTCAAGCAA 
    TTGATAATGA AAGCAATGGT GGAGCTCGTT CATTAAGAGG CCGGCAAAAA 
    GACACAAAAA TAAAAGAAGA TAATAATTCA ATTAAAGATG ACTTTAAGAA 
    ACGCAAGGTG GTGGAACCTG AAGCAAGGGA AGAAGGTGAA ATTTCAGAAT 
    CTGAAGCAGA GACTAAATAT CGTCAGGACA AGGAAGAAAA GTGGCTGGAA 
    TGGTGTTCTG AAGTTTTGGA TGACGAGCAG GAGATATTAA AGCGGCTGGA 
    TAGGCTTCAG AATACTAGTG TAAATCTGCC AAAGGAAAAG GTTCTTTC

    Gene models with high sequence identity

    1. AT2G13370.1 [+] show detail - chromatin remodeling 5
      E-value: 0; Score: 679.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA/RNA helicase, C-terminal 20.169
    HMMPfam DNA/RNA helicase, C-terminal 8.6e-16
    Gene3D no description 9.8e-13
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 5.2e-31
    superfamily Homeodomain-like 1.7e-20
    HMMPanther CHROMODOMAIN HELICASE DNA BINDING PROTEIN 4e-126
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 4e-126
    HMMSmart DNA/RNA helicase, C-terminal 7.2e-25

    See the detailed result >

    AT2G13370.1

    Model type
    Protein coding
    Short Description
    chromatin remodeling 5
    Computational Description
    chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR