K36631

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36631

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36631

Determination of introduced cDNA(s)

  • J033033N23 - Rice Full-length cDNAs - Original: J033033N23

    full reading [+] show sequence

    Nucleotide sequence: J033033N23 - full reading 
    GGTTCGATCC AAGAAGCAGA GAGGAGAGGG ATTCTTGTTT TCTTGATCAT 
    CCATGGCGCG GCTGCGGCGT GGTCTCGAAC ACCTGGGGCG GCGGTACGCG 
    TTCTACGCGG CGTACCACTC CAACCCGGCG AACGTGCTCG TCCACGCCGT 
    GTGCGTGTGG CCCATCCTCC TCACCGCGAT GCTCCCGCTC CGGTACGCGC 
    CGCCGCTGCC GCTGCTCCGA TTCTACTGCC CGCTCTGCCG CCAGTACCTC 
    CCCGTGCAGC TCGGCTTCCC CGTCGCCGTC GCGCTGGGCG CGTACTACGC 
    GCTCATGGAC CGCCGCGCGG GCGCCGCCGC CGCGGCGCTC TGCGTCGCCG 
    GGTGGGCCGC CGGGACGCTC CTCGCCGACG CCGCGGGGCT CTGGACGTTC 
    CGCGACGCGT GGAGGCCGCT GCTCACCGCG CAGGCCGTGC TCTGGTCCGC 
    CCAGTTCTTC TCCCACGCCT TCTTCGAGAA GCGGCGGCCG GCGCTGGTGG 
    ATGGCCCGGT GCAGGCGGTG GTGACGGCGC CGCTGTTCGT CTTCATCGAG 
    GTAATTGGCC GTGTTCGTTC GAGTTGGTCG CCGTGCGGCG ATGGCGACCG 
    CCAAGTGTTC GATTTAATGC GAGTGCGGTT GCTCCGTGTT TTTGCAGGTG 
    CTGCATAGGT TGTTCGGGTA CGAGCCGACG CCGGGGTTCT ACAAGCGCGT 
    CCAGGCGAGG GTGGCGGCGA TGCACAACGG GCCGCCGGCA CCGGCGCCGG 
    CGCCGGAGAA GAAGGAGGAG GAGGAGAAGG AGAACGTGAG CAAGGCGACG 
    CAGGAGGAGA GCGCCGAGAA GGATTCGTAG GTGTTTTCGA GGGAGAGTGT 
    GACAGACAGG AGAGGCAGAG CTCGGGATGT TATGAACTTG TAATAGCTTG 
    TTCATGTATA GTAGTAGTAT AATAATAATA CTAAGAAAAT AAATGAGTTT 
    AATTTTC

    Gene models with high sequence identity

    1. AT1G18720.1 [+] show detail - Protein of unknown function (DUF962)
      E-value: 3e-18; Score: 36.60

     

    InterPro Scan Digest

    See the detailed result >

    AT1G18720.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF962)
    Computational Description
    Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR