K36647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36647

Determination of introduced cDNA(s)

  • J013092P04 - Rice Full-length cDNAs - Original: J013092P04

    full reading [+] show sequence

    Nucleotide sequence: J013092P04 - full reading 
    AGCTCTCCCC ATCTATCTCC TCTCCCTCTC CGCCCATTTC TCCTCTCCAC 
    CTGCGATCCA TCCGCGCCCG CGAGGAGGAG GGAGCCGGAC GCCGCCGCGG 
    GGAGAGCAGG GGAGAGAAGG AGAGGAGGAG ATCGCCGTCG CCGTCGCCGT 
    CGCCGTCGCC GATCTCGAGC GGGAGCGGAG ATGGGGCTCA CGTTCACGAA 
    GCTGTTCAGC CGCCTCTTCG CCAAGAAGGA GATGAGGATC CTCATGGTCG 
    GTCTCGATGC GGCCGGTAAA ACCACCATCC TCTACAAGCT CAAGCTCGGC 
    GAGATCGTCA CCACTATCCC CACCATCGGT TTTAATGTCG AAACTGTTGA 
    GTACAAGAAC ATTAGCTTCA CCGTTTGGGA TGTTGGTGGT CAGGACAAGA 
    TCAGGCCCCT GTGGAGGCAC TATTTCCAGA ACACCCAGGG CCTCATTTTT 
    GTTGTGGACA GCAATGACAG AGAGCGTGTT GTTGAGGCCA GGGATGAGCT 
    CCACCGTATG CTGAATGAGG ATGAGCTACG TGATGCTGTG CTGCTGGTGT 
    TTGCAAACAA ACAAGATCTT CCTAATGCCA TGAACGCTGC TGAGATCACC 
    GACAAGCTTG GTCTGCACTC CTTGCGCCAG CGGCACTGGT ACATCCAGAG 
    CACATGTGCT ACCTCTGGTG AGGGGTTGTA TGAGGGGCTT GACTGGCTTT 
    CCAACAACAT TGCCAACAAG GCTTGAAGCA TCTTGGCCGG GCTTAAATGA 
    AAGGAAGACA TGGCGGATAT CCCTGAGTGA ACACTGCCTT TTTACGTATC 
    GAAACTATAT AGTCATGACA GATAATGATG TGGATGTTTT GGGAAGATAA 
    AGCTCTTTAG GTTCCACCAC CAAAGGAGCT AGCTATCAGA TTGTTTTTCG 
    TGGGGTGTTA AAAAATCGTG CGTGTTTCAG TTTGGTTTTT AATCGAAAGG 
    CTTACGGTGC CTGACTTTTG TACCTCTGTA CTCGCCACAG ATGTTGTAGT 
    ATTGACTTGT CTTGGGCATA GCGTATTGTT ACGTAATCCT GTTCTGTGCA 
    GCCACCCCCA ATATCCTTAC CAGTTTATCC CCCGTTGCCT TCCTGGCCAG 
    CATTCTGCTG CCTTTCTTCT TGGATGGCAC TTCATTCCTT TTCAGTAGCT 
    TTCCGTATGT TTATATTGAA GTAAGCGCGT TGTAACGTCA GCCTGAAAAT 
    TGCAAACCGA TCATTTCCTG TGGGCTGTAA GGGTTTCTTG GAACATAAGA 
    ATTTTACAGG AATGGGTTTT GATCTCAATG AAATCCGTTT GGGC

    Gene models with high sequence identity

    1. AT3G62290.3 [+] show detail - ADP-ribosylation factor A1E
      E-value: 2e-99; Score: 359.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Small GTP-binding protein 2.8e-18
    HMMPfam ARF/SAR superfamily 9.2e-80
    superfamily P-loop containing nucleoside triphosphate hyd 8.9e-56
    ProfileScan ARF 25.781
    HMMSmart ADP-ribosylation factor 3.8e-136
    HMMSmart Small GTPase SAR1-type 2.6e-26
    HMMSmart Ras small GTPase, Rab type 0.0032
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 4.1e-146
    HMMPanther ARF/SAR superfamily 4.1e-146
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    FPrintScan ARF/SAR superfamily 1.3e-19
    Gene3D no description 5e-67

    See the detailed result >

    AT3G62290.3

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor A1E
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
    Computational Description
    ADP-ribosylation factor A1E (ARFA1E); CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1).
    Link
    InterPro Scan - TAIR