K36650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36650

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36650

Determination of introduced cDNA(s)

  • J033068K09 - Rice Full-length cDNAs - Original: J033068K09

    full reading [+] show sequence

    Nucleotide sequence: J033068K09 - full reading
    GTCAAGCAAC CACTGGTAGT ACACTGCAAA TATTCCTCTT GCCGTGTCAC 
    TGGCTTGCTC TGCTCGATCA CGAGCTTGAA CTGTGCTTGT GATCAGCGAG
    CAATGGCTAC TCAATGGGTG CTCGTGGTGG TTGCTGTAAT GGCCGTGCTC
    TTCGCCGGAG GCGCCGCCGG CGGGCAGCTG TCGACGAGGT ACTACGACGG
    CAAGTGCCCG AACGTGCAGA GCATCGTGAG GGCCGGGATG GCGCAGGCCG
    TGGCGGCGGA GCCCCGGATG GGCGCCTCCA TCCTCCGCAT GTTCTTCCAC
    GACTGCTTCG TCAACGGGTG CGACGCGTCC ATCTTGCTCG ACGACACGGC
    CAACTTCACC GGCGAAAAGA ACGCCGGGCC GAACGCCAAC TCGGTGCGCG
    GGTACGAGGT GATCGACGCC ATCAAGACCC AGGTCGAGGC GTCCTGCAAC
    GCCACCGTCT CCTGCGCCGA CATCCTCGCC CTCGCCGCGC GCGACGCCGT
    CAACCTGCTG GGCGGGCCGA CGTGGACGGT GCAGCTGGGT CGCCGCGACG
    CGCTGACGGC GAGCCAGAGC GCGGCGAACG GCAACCTGCC GGGGCCGGGG
    TCCGACCTCG CCACGCTCGT CACCATGTTC GGCAACAAGG GGCTGTCGCC
    GCGGGACATG ACGGCGCTGT CGGGCGCGCA CACGCTGGGG CAGGCCCGGT
    GCGCCACGTT CCGCAGCCGC ATCTTCGGCG ACGGCAACGT CGACGCCGCC
    TTCGCCGCGC TCCGGCAGCA GGCGTGCCCG CAGTCCGGCG GCGACACGAC
    GCTGGCGCCC ATCGACGTGC AGACGCCCGA CGCGTTCGAC AACGCCTACT
    ACGCGAACCT GGTGAAGAAG CAGGGGCTGT TCCACTCCGA CCAGGAGCTG
    TTCAACGGCG GGTCGCAGGA CGCGCTGGTG AGGAAGTACG CCGGCAACGC
    CGGCATGTTC GCCGCCGACT TCGCCAAGGC GATGGTGAGG ATGGGCGCCC
    TCCTGCCGGC GGCCGGGACG CCGACCGAGG TCCGTCTGAA CTGTAGGAAG
    GTCAACTAAA GTCAACCTGA TGACGAACGT GTCCAAGAAC TACAAGTGTA
    GTGAACAGTC AAGATGGCTG TTTCTGCTCC TTTGGATTTA TTTTTGTGAT
    CTGGTTAATA TTTTTATTAT TTGTGGAATT AATAATGTTG CTGTAAACAT
    CTTTTGATAG CTGCCAGTCA GTCAATGATC ATCTGTAAGC ATAAAAAAAC
    GTTTGAAAAT ATGTTGCACA TGTTTTTGTG

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 1e-97; Score: 353.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.8e-63
    ProfileScan Haem peroxidase, plant/fungal/bacterial 73.002
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Plant peroxidase 1e-63
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.5e-34
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.5e-34
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.5e-34
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.5e-34
    FPrintScan Haem peroxidase, plant/fungal/bacterial 4.5e-34
    superfamily Haem peroxidase 1.5e-112
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.5e-79
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR