K36701

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36701

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36701

Determination of introduced cDNA(s)

  • J013065E23 - Rice Full-length cDNAs - Original: J013065E23

    full reading [+] show sequence

    Nucleotide sequence: J013065E23 - full reading 
    GAAAAGGAAA AAAAAGAGAG AAAAAGATGG CACACGAGAG CGGCGACACT 
    TTGCTTCGCT TGGGTTTCAT CGTCGTCCCC TCCTCCTCCT TCCTTTGACC 
    TCGGCTCGAT CGACCATCCC GCGGAGGAGA CGACGCCGCG GCGGCGGCGG 
    AGGACTCGCC GGCGGCGGGG ATGGACGTGC CGTGGCTGCT GGTGGCGCAC 
    GGGTCGGTGA CGGCGCTGGT GGTGGTGTCC TTCCTCTGCG GGCAGTGGCC 
    CATCTTCGAG GGCACCTTCG TGCAGCGCGT CAACCACTTC CTCACCTTCG 
    GCGCCTACCA CCACCTCCTG CGGCTCGTCC ACGCGGCGTG CGGCAATGGG 
    GCCAGGGATC TCGTCCTCGG CGTCGAGAGC TACTGCTGCG ACCGGCCCAA 
    CCCGATCCTG CAGATTTTTT ACGTTGCCAT AATAGGGGTA ACATATTTTA 
    TAATCGTCCA GACATCTTTC CAGTACATTC CTGGGTACTA TGTGAGTGGA 
    CTGCACAGAT ACCTGAGTAT CGTGGCTGTT GCTATTGGTG CTTTACTCTT 
    CGTGCTGACT AGCTTTTCTG ATCCTGGAAC TGTCACTGCT GAGAATGTTT 
    CTCAATATCT ATCTGCCTAT CCATATGATG GCATCATTTT TGAGGAGAAA 
    GAGTGTTCTA CCTGCAAGAT TGCCAGGCCA GCCAGGGCAA AGCACTGTAG 
    AATATGTGAT AAATGTGTTG CACGGTTTGA TCACCACTGT GGATGGATGA 
    ATAACTGCAT TGGGGAGAAA AATACTCGCT ATTTTGTGGC CTTTTTAGTT 
    TGGCATTTCC TTATATGTCT GTACGGAGCG GTTATTCTTG GTTTCATTCT 
    TGCTGGTGAA TTAAAAGAAA GGAAAGTTGT CTACATATTG ACAGTTTATT 
    ATGGCATCGA CAATTCATTC TCTGGGCTAT TTCCACATGT TGCACAGTGG 
    CTGCTTGCTG TGCATAACAC ACAGATACTC TTAGCGGTCT TTTTGGCTAT 
    AATTGCATTG CTCCTTGGTG GGTTTTGTGC TTACCACACA CATCTTTGCT 
    TAACAAATAC AACAACGAAT GAGACATTCA AATGGCAAGA CTATATTATG 
    TGGAGGAAAA AGGTGAACGA GGAAAAGGCT GCTGCAAATG GTGAAGTGCG 
    CAAATCGCCA CCAAGCAAAT GGAAGGCGTT TTTCTCTAGA TCACATACTG 
    AGGCCGATGA AACAATTGTG AAAAATAACA TATATGACAG AGGCATGATT 
    AGAAACATGT GCGAGGTGTT TGTCCCTTTG TCAGAACGGC AGTCATTTTC 
    CCGCAAGAAA TCTGATTGAT CTGAATGCTG TTGCAGCTTT GCACCTGTTG 
    TATCACTTCT ATGCTGTAAA TCCTTGTAGA ATATTAGAAT CATTTTTTCC 
    ATACTAGAGA AGAAACAGTC TGAGGATGGT GATCAGGAGT GAGCATCACA 
    CAAGGAGACC CCCCACCAAA AAAAATTCAG ATCTGCCCAA GTTGCTTTTG 
    GTTTTGCTAT CCTGGAATAG TAGGTTTGAA CAACAGTATA CTACCAAGAG 
    TTGATAACTT ACTTGATAGA ATCTGTTGAC AGCATATGGG AATGAGAATT 
    GTACATTGTC TTGGTT

    Gene models with high sequence identity

    1. AT3G04970.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 4e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, DHHC-type 8.3e-26
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 4.8e-38
    ProfileScan Zinc finger, DHHC-type 25.445

    See the detailed result >

    AT3G04970.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5080 Blast hits to 5078 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2181; Fungi - 755; Plants - 829; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR