K36712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36712

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36712

Determination of introduced cDNA(s)

  • J013088K05 - Rice Full-length cDNAs - Original: J013088K05

    full reading [+] show sequence

    Nucleotide sequence: J013088K05 - full reading
    GCCTCCTCAT TCCTGCATTG CATTGCTTCC GAGCTCAAAA GTCGTCGTAG 
    ACCCCCGCCT CCTTCCTCCT CCTCCTCGCG CTTCGATTTG GTTTGGTTTG
    ATTCGGTTTG CGAGATGAAG GATGGTGGTG GAGGAGGAGG GAGGGGGCAG
    CAGCAGCAGT GGCCTTGCGA CTACTGCGGG GAGGCGGCGG CGGCGCTGCA
    CTGCAGGGCG GACGCCGCGA GGCTGTGCGT CGCCTGCGAC CGCCACGTGC
    ACGCCGCCAA CGCGCTCTCG CGGAAGCACG TCCGCGCCCC GCTCTGCGCC
    GCCTGCGCCG CCAGGCCGGC CGCCGCGCGC GTCGCCTCCG CCTCGGCGCC
    GGCGTTCCTG TGCGCGGACT GCGACACCGG GTGCGGCGGC GACGACGGCG
    CGGCCTTGCG GGTGCCCGTC GAGGGGTTCT CCGGGTGCCC CGCCGCCGCC
    GAGCTCGCCG CGTCGTGGGG GCTCGACCTC CCCGGCGGCT GCGGCGGCGA
    GGAGGAGGAG GCCGACGACG CGTTCTTCTC GGCGCTCGAC TACTCCATGC
    TCGCCGTCGA CCCCGTGCTG CGCGACCTCT ACGTGCCATG CGACCCGCCC
    GAGGTGGTGG TGGCCGGCGG CGGGCGGCGA CTCAAGGGGG AGGCGCTCGG
    CCACCAGCTC GCCGAGATGG CGCGCCGGGA GGCCGAGACG GCGCACCCGC
    ACACGCAGCC GCACTCGGAT CTGAGCCCCC GCACGCCTCG CCGGACCTCC
    GCCGCGGCGA GCGGCCGCCT GCAGGAAAAG CAAGCTCCCC CGCCGTTGCC
    TCATGCTGCT GCGACGGCGG CGCCGCTGCC GTACACTTCA CTGCTCATGA
    TGGCGCCGGC CAACTGCACC GAGCTCATGG AAAACAACCG TGTTGGAGAC
    GAAGATGAAA ATGTTCTGTG GGAGAGCACC GCGCCATCAG TGCCACCAAC
    CCAGATATGG GATTTTAATT TGGGAAAATC AAGGGATCAC AATGAGAACT
    CTGCACTTGA AGTTGGATTT GGCTCAAACA ATGGAGGCTT TATGATTAAG
    AGTTATAATG ACATGCTCAA GGAGATTTCT TCTGGGACAA CGAAGGATCT
    GGAAGATATT TATGACTCAA GATATTTTGC AGCTGCCGAA GATATCATGT
    CGACTAATGT CTGTCAGCTG TCATCGAAAA ATCCAAGCAC CAGGAGCAAC
    AAACGGAAGG CGAGCTCATG CGCTTCGACG ATCGATGGAC CGACAACTTC
    CACAAGCCAT GTACCTGCTG CTTCAGGGGC ATTGGGGGGC TCTTCGAACG
    ACAGAGGATC GGCTCTCCCC AAGGAGATTT CCTTCTGTGA TCAGACCGTC
    GTCCCTACCG GAGCCGATCA GAGGCCATGT ACCATCAAGA TCGACAGCGA
    GACGCTCGCG CAGAACAGGG ACAGCGCGAT GCAGCGGTAC AGGGAGAAGA
    AGAAGAACCG CAGGTATGAG AAGCACATCA GGTACGAGTC GAGGAAGCTG
    AGAGCGGACA CGAGGAAGAG GGTGAAAGGC CGGTTTATGA AGTCGAACGG
    AGCACCTGAT GATGTCAGCA ATGGCGGGTG ATCTCATCCC TGCAATCCCT
    GATAGCTAGC TGCAATGTAC GTAGCCTGGC TTTTTGACGT TGCAGAGATC
    GATGTGGCCA TATATATGCT GAGAGCTAAG TCTGAAATAT GTTGCGTATG
    TTGTTACAAC CTATGCACGC TCTGCTTAAG TCTGTCTGCT GCTGCATGTA
    TTGTTCAGCT AAAATTTTTG CGTCCAAGAG TCGATCTTGA TAATTAAGTA
    CCCCTACTAC AAATCTACAC TACATACTGT AATAGACCTT AGATTTTTTT
    TCTCATCTCC TCGTAGAAAT ATATGGCATT TTATATATAC GT

    Gene models with high sequence identity

    1. AT2G33500.2 [+] show detail - B-box type zinc finger protein with CCT domain
      E-value: 1e-19; Score: 95.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam CCT domain 5.2e-17
    ProfileScan Zinc finger, B-box 9.883
    ProfileScan CCT domain 15.001
    HMMSmart Zinc finger, B-box 1.1e-11

    See the detailed result >

    AT2G33500.2

    Model type
    Protein coding
    Short Description
    B-box type zinc finger protein with CCT domain
    Computational Description
    B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR