K36712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36712

Determination of introduced cDNA(s)

J013088K05 - Rice Full-length cDNAs - Original: J013088K05

full reading [+] show sequence

GCCTCCTCAT TCCTGCATTG CATTGCTTCC GAGCTCAAAA GTCGTCGTAG 
ACCCCCGCCT CCTTCCTCCT CCTCCTCGCG CTTCGATTTG GTTTGGTTTG 
ATTCGGTTTG CGAGATGAAG GATGGTGGTG GAGGAGGAGG GAGGGGGCAG 
CAGCAGCAGT GGCCTTGCGA CTACTGCGGG GAGGCGGCGG CGGCGCTGCA 
CTGCAGGGCG GACGCCGCGA GGCTGTGCGT CGCCTGCGAC CGCCACGTGC 
ACGCCGCCAA CGCGCTCTCG CGGAAGCACG TCCGCGCCCC GCTCTGCGCC 
GCCTGCGCCG CCAGGCCGGC CGCCGCGCGC GTCGCCTCCG CCTCGGCGCC 
GGCGTTCCTG TGCGCGGACT GCGACACCGG GTGCGGCGGC GACGACGGCG 
CGGCCTTGCG GGTGCCCGTC GAGGGGTTCT CCGGGTGCCC CGCCGCCGCC 
GAGCTCGCCG CGTCGTGGGG GCTCGACCTC CCCGGCGGCT GCGGCGGCGA 
GGAGGAGGAG GCCGACGACG CGTTCTTCTC GGCGCTCGAC TACTCCATGC 
TCGCCGTCGA CCCCGTGCTG CGCGACCTCT ACGTGCCATG CGACCCGCCC 
GAGGTGGTGG TGGCCGGCGG CGGGCGGCGA CTCAAGGGGG AGGCGCTCGG 
CCACCAGCTC GCCGAGATGG CGCGCCGGGA GGCCGAGACG GCGCACCCGC 
ACACGCAGCC GCACTCGGAT CTGAGCCCCC GCACGCCTCG CCGGACCTCC 
GCCGCGGCGA GCGGCCGCCT GCAGGAAAAG CAAGCTCCCC CGCCGTTGCC 
TCATGCTGCT GCGACGGCGG CGCCGCTGCC GTACACTTCA CTGCTCATGA 
TGGCGCCGGC CAACTGCACC GAGCTCATGG AAAACAACCG TGTTGGAGAC 
GAAGATGAAA ATGTTCTGTG GGAGAGCACC GCGCCATCAG TGCCACCAAC 
CCAGATATGG GATTTTAATT TGGGAAAATC AAGGGATCAC AATGAGAACT 
CTGCACTTGA AGTTGGATTT GGCTCAAACA ATGGAGGCTT TATGATTAAG 
AGTTATAATG ACATGCTCAA GGAGATTTCT TCTGGGACAA CGAAGGATCT 
GGAAGATATT TATGACTCAA GATATTTTGC AGCTGCCGAA GATATCATGT 
CGACTAATGT CTGTCAGCTG TCATCGAAAA ATCCAAGCAC CAGGAGCAAC 
AAACGGAAGG CGAGCTCATG CGCTTCGACG ATCGATGGAC CGACAACTTC 
CACAAGCCAT GTACCTGCTG CTTCAGGGGC ATTGGGGGGC TCTTCGAACG 
ACAGAGGATC GGCTCTCCCC AAGGAGATTT CCTTCTGTGA TCAGACCGTC 
GTCCCTACCG GAGCCGATCA GAGGCCATGT ACCATCAAGA TCGACAGCGA 
GACGCTCGCG CAGAACAGGG ACAGCGCGAT GCAGCGGTAC AGGGAGAAGA 
AGAAGAACCG CAGGTATGAG AAGCACATCA GGTACGAGTC GAGGAAGCTG 
AGAGCGGACA CGAGGAAGAG GGTGAAAGGC CGGTTTATGA AGTCGAACGG 
AGCACCTGAT GATGTCAGCA ATGGCGGGTG ATCTCATCCC TGCAATCCCT 
GATAGCTAGC TGCAATGTAC GTAGCCTGGC TTTTTGACGT TGCAGAGATC 
GATGTGGCCA TATATATGCT GAGAGCTAAG TCTGAAATAT GTTGCGTATG 
TTGTTACAAC CTATGCACGC TCTGCTTAAG TCTGTCTGCT GCTGCATGTA 
TTGTTCAGCT AAAATTTTTG CGTCCAAGAG TCGATCTTGA TAATTAAGTA 
CCCCTACTAC AAATCTACAC TACATACTGT AATAGACCTT AGATTTTTTT 
TCTCATCTCC TCGTAGAAAT ATATGGCATT TTATATATAC GT

Gene models with high sequence identity

AT2G33500.2 [+] show detail - B-box type zinc finger protein with CCT domain
E-value: 1e-19; Score: 95.50

InterPro Scan Digest

Program	Description	E-value
HMMPfam	CCT domain	5.2e-17
ProfileScan	Zinc finger, B-box	9.883
ProfileScan	CCT domain	15.001
HMMSmart	Zinc finger, B-box	1.1e-11

See the detailed result >

AT2G33500.2

Model type: Protein coding
Short Description: B-box type zinc finger protein with CCT domain
Computational Description: B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT1G28050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR