K36725

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36725

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36725

Determination of introduced cDNA(s)

  • J033024G19 - Rice Full-length cDNAs - Original: J033024G19

    full reading [+] show sequence

    Nucleotide sequence: J033024G19 - full reading
    GTTTCTCTCT CTCCTTGTCT CTCTGTGCTG TTGTTGTTGC GGGTGAATCT 
    GCTTGGATTT CGTCGGAGTT TTCTGTCGCG GAGGAGGAGG GGGTGGTGGT
    TGATCGGAGG GGAGGGGGGA GGGAGATGGC GAGGGAGAGG AGGGAGATAC
    GGAGGATAGA GAGCGCGGCG GCGCGGCAGG TGACGTTCTC GAAGCGGCGG
    CGGGGGCTGT TCAAGAAGGC GGAGGAGCTG GCGGTGCTGT GCGACGCCGA
    CGTCGCGCTC GTCGTCTTCT CCTCCACCGG CAAGCTCTCC CAGTTCGCCA
    GCTCCAATAT GAACGAGATC ATTGACAAGT ATACTACACA TTCAAAGAAC
    CTGGGGAAAA CAGATAAGCA GCCTTCTATT GATCTGAATT TAGAGCACAG
    CAAGTGTAGC AGTTTGAATG AACAACTGGC AGAAGCAAGT CTTCAACTTA
    GACAGATGAG AGGTGAGGAG CTTGAGGGAT TGAGTGTGGA AGAGCTGCAG
    CAGATGGAAA AGAACCTCGA GGCAGGACTG CAGCGGGTGC TATGTACAAA
    GGACCAGCAA TTCATGCAAG AAATCAGTGA GCTCCAACGA AAGGGCATTC
    AGCTGGCAGA AGAGAATATG CGCCTCAGAG ACCAAATGCC TCAGGTGCCT
    ACTGCTGGCT TGGCGGTTCC TGATACTGAA AATGTTCTTA CTGAAGATGG
    ACAATCATCT GAATCTGTGA TGACTGCATT AAATTCGGGA AGCTCGCAGG
    ATAATGATGA TGGTTCTGAT ATATCCCTGA AACTAGGGTT GCCTTGAAAT
    AAAAGGACCA GCTAGAGAGC TGAGAAATGG GATGACGACC ACCATGAATT
    ATTTGTCTGT GTGCATGAGT GGATGAAGTT GGAAGTTAAA TGCATCTTAA
    GAAGATCAAG AAGATGTCAT GCTATGAGAT TACCAACAAG GCTGCAATAA
    TCCTATCCTA TGTTAAAAAG GAGATCGATT GACTTGTCAT CCTATGCCTG
    CTGATGCAAT GGTCCGGTTG CTTGGATCTT TTTTTCTCAA CTTGTACTAG
    TGTACCATAC TACCTTCGTC GCACTTAATT TAAATGCGAC ATGTACGTAT
    GTATCGTTCG CTTAATTCGT GCAAGTTATG TACGTACCTG TATGGGAACT
    GTATGGAAAC TTGTGACCTC GGCTGAGACT TATTATTGGC ACAATTATTA
    AGCTAGTCAT TCTCATCG

    Gene models with high sequence identity

    1. AT2G22540.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 8e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Transcription factor, MADS-box 0
    HMMSmart Transcription factor, MADS-box 9.9e-35
    FPrintScan Transcription factor, MADS-box 1.3e-23
    FPrintScan Transcription factor, MADS-box 1.3e-23
    FPrintScan Transcription factor, MADS-box 1.3e-23
    HMMPanther MADS BOX PROTEIN 3.4e-58
    HMMPanther MADS BOX PROTEIN 3.4e-58
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Transcription factor, MADS-box 28.104
    ProfileScan Transcription factor, K-box 13.4
    HMMPfam Transcription factor, MADS-box 2.9e-23
    HMMPfam Transcription factor, K-box 0.000000000000022
    superfamily Transcription factor, MADS-box 2.3e-28

    See the detailed result >

    AT2G22540.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
    Computational Description
    SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR