K36808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36808

Determination of introduced cDNA(s)

  • J023048O17 - Rice Full-length cDNAs - Original: J023048O17

    full reading [+] show sequence

    Nucleotide sequence: J023048O17 - full reading 
    GAGGGCGAGA GGGTCGATCT GCTGGCCCTG CCACTCGATC CGTTCAAGTA 
    GGGGTGGTGG TGATGGAGAT CAACCGGGCT GCTGGTGATG GAGAACGACA 
    ACGAGGTGAT CGATCTGCTG GCCTATCGCT AGATCCGGTG GGTACATGCA 
    CTCAAGTTCG CCATGAAGCC GATGCAATCC TTCTCCATCT CCACAGTGGG 
    TTGGCGCCCT TCTGCTCAAG TTTGAAGCTC CGCTGCCGTG CGGCGCCGAC 
    ACTGTTTCGC AATTGCAGAT CTGGCTAGCA ACAGTGGTCG GAGGTATGAT 
    ATTTTGCATG CCTCTTACAA GTAATGCTAT GGCCTATGTA AATGTCTGCA 
    AGACTACAAG GAATCTATGA ATCTATCCTG CTCTGCTGAG GGATTCTTTA 
    TTTTAGTACA GTAGAGAACT GAGATCAGTG CAAATCGAGA ATTCAGGCTC 
    TATTTCTGCT CCTTAACATC AGAATTGAAG TTATGTGGCA GATTGTGTTA 
    GAACAAAAAC CTTCAGAGAA GCTCAACATT TACTAATAGG AGTACGTTTT 
    TGGACTTGTG ATGCTTCTGG TGAGGTTTTT GGACTAGACC AACCAATAGC 
    ATTTAGGTTG TTGGGCTCGG TGAGATCATT ACAAGCACTT GAAGGTGTGG 
    CTAAGTAATT GGATGATTCA CTGTGGTGCT GATGCAAGTC AGCATTGGTA 
    GTCTTTGAAG ATGCAGAATG AACTCTACTA ATTTAGGGCT AAGCCATGCT 
    GATTTAAACT GATATATATT TAGTGCTCCT ATAGCAATTG GTGAAGAAAT 
    TGTGTGGAAG TTTCTGTTAA AATGATGAAA TTAAGAACAT GTTTGGTAAT 
    ATATAAATAC TATAGATTGG ATCTGAAACG TGTTGTGGTG AGCTATGGCA 
    CAAAATCCTC TTTCCATGAA TTGAACACAT AATGGTTAGA GGTCGGAGAT 
    TAATGATATG GCCTATGCAA ATATCTACC

    Gene models with high sequence identity

    1. AT5G58330.3 [+] show detail - lactate/malate dehydrogenase family protein
      E-value: 0.000000007; Score: 58.50

     

    InterPro Scan Digest

    See the detailed result >

    AT5G58330.3

    Model type
    Protein coding
    Short Description
    lactate/malate dehydrogenase family protein
    Computational Description
    lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G56720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR