K36823

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36823

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36823

Determination of introduced cDNA(s)

J013113F10 - Rice Full-length cDNAs - Original: J013113F10

full reading [+] show sequence

ACAGATACCT TTCTCGGCCT TTTGGCTAAG ATCAAGTGTA GTATCTGTTC 
TTATCAGTTT AATATCTGAT ATGTGGGCCA CGTGCCCACT TCGATATTAA 
ATTTATTTTT TGTGGGGGAG GGTCCACTAC AGTGGCTTGC CACTGGGATC 
CCTTGCGTGT CGCCCAGGCG TTGCACTACA GCCTGGGCCC GGCGCACCCC 
AACCAAATCA AGCTTAAATT TTAATTAAAA ATGTATTTGA ATCCGTTAGA 
AATCTATTTC TTCTGATTAA GTTAAAATCT TAATTTAAAA TTTAGTGTTT 
ATATTACTTG AACAAAAAAT CATTGTTGTT AAGAATGGAA TGGTTAAAAA 
TGTGAAATTA ATCAGAGGTT TCCGCAAAAT ATCCATGATT TGGATTACTA 
GTGTTCTTTT GCAAAATTCC CCTCGTTCCA TCAGCGCAGG AGGCCGCCAA 
TCCGTGACCA AGAAAAGGCT ACACCCAAAA TGAAAATGCT ACTACTTGTA 
CATTAGAACT AGATTAGCTT ATCTAATAAA GGAGTGTTAC ACTTTAATCT 
CTTCACCTAG CTGTAGAATT TTACATTTTC CCTGCGGTTT ATAACACCAT 
CTCTTCCCTG TAAAATGCAT GCAGCAACGA GAACACAGCA GCTTGATGAT 
TCAGGAAGCA GCGTATGTGA CAGATGATGC CTTGTGCCTC CGCCTGTTGC 
TCATCTTCCC GCCACCATCC GACGACCACT GAGACTGCGA ATGAGAGCTC 
TTCTTCGTCT TCCTCCTCTC CGCTCCTCCC TGCGCTCCCC CGAGCATGGC 
GATCCTCCCG ATCCCTCGCG ATATCGACGC CAGCAGCGCC CGGCCGTGCT 
CCCCGCCGCC ACGGCCATCC CGCATCCCCT GCCTCATCAC CCCCTGCTCC 
CGCTCCAGCT CCGTCAGCCG CACCCGCATC CGCGCGATCT CCAGCTTCAG 
CTCCCGGTTC TCCCGCCGCA GCGACGCGTA GTTGTCGCGC TGCGGCGACA 
CGCACGAGCT CGCCACCCCG CTGCCGCCGG TCATCATCAT CCGCTGCGAC 
AGCGACCCGC CGCAGCCGTC GCCGCCGAGG GAGGTGGTGT GGGGGGTAGT 
TGACGACACC GTGGATTTGA GGCGGAGCTG CTCGAAGTAG AGGACGCGCA 
CCACCGTCTG GATGGGGAGG CGGTCGTTCT GCGCCGCGTG GCTCGACGCG 
TCCTGCGACA GCTTCTGGCA GTCGATCAGC TTGCACACCT TCTTGCACTC 
CGACTCCATC AGAGATGGAT GAGCCTGTTG TTTATCACAA TTCAGTTCGT 
CACACACACA CAGCACAAAG CTGTACATCA TCAGACACTA CACAGATTGC 
AAATGGTTCT AATGATCACA TTAAACAGTG CAAGTATTCA TGTCACATTT 
TCATC

Gene models with high sequence identity

AT3G08660.1 [+] show detail - Phototropic-responsive NPH3 family protein
E-value: 9e-32; Score: 135.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NPH3	4.9e-07
Coil	coiled-coil	0

See the detailed result >

AT3G08660.1

Model type: Protein coding
Short Description: Phototropic-responsive NPH3 family protein
Computational Description: Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G08570.1); Has 956 Blast hits to 919 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 886; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR