K36824

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36824

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36824

Determination of introduced cDNA(s)

J013157L23 - Rice Full-length cDNAs - Original: J013157L23

full reading [+] show sequence

GAGGAGGAGG AGGAGATAGA GTGAGGCCGT GACGGCGACG GCGAGGTCTG 
GGGGCGGGGC GCGATGGGAG ACGGAGCGGA GGCGGCGGGG GCGACCGCGG 
CGAGCAGGTT CGGGACGATC TGCGTCTTCT GCGGCAGCAA CGCGGGGCGC 
CGCAGGGTGT TCGGCGACGC GGCGCTCGAC CTCGGCCACG AGCTGGTGAG 
GCGGGGCGTC GATCTGGTCT ACGGCGGCGG CAGCATCGGG CTGATGGGCT 
TGATCGCGCG TACGGTTCTC GACGGCGGCC GCCGTGTCGT CGGGGTGATT 
CCTAGAGCTC TCATGGCTGT CGAGATATCA GGTGAGAGTG TGGGAGAAGT 
AATAGTTGTA CAGGACATGC ATGAGCGGAA AGCGGAGATG GCTCGGCGAT 
CCAAAGCGTT CATTGCTCTT CCTGGGGGCT ATGGAACAAT GGAGGAGCTG 
TTAGAGATGA TAACATGGTG CCAACTTGGA ATTCATGACA AGCCAGTTGG 
ATTGCTAAAT GTTGACGGTT ACTACGATCC ACTGCTCGCG TTGTTCGACA 
AAGGCGAGGC GGAGGGCTTC ATCAACTCTG ATTGTAGACA AATATTTGTA 
TCTGCACCAA CTGCAAGTGA ATTGCTGACA AAGATGGAGC AATACACTCG 
GTTGCACCAG GAGGTGGCCC CTGCAACAAG CTGGGAGATC TCAGAGCTTG 
GCTATGGAAG AACACCGGGC GCTGATCAAT CATAGCCCCC CTCACTTCAA 
AAGTGACTAG TACAAGCTCT ACTAATGCCT TTGCTTTTGT TTTCCCTTGC 
TTCTTGTGAT CAAGTGTCAA ATTAAACTCC TCACCG

Gene models with high sequence identity

AT5G11950.2 [+] show detail - Putative lysine decarboxylase family protein
E-value: 5e-76; Score: 281.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Conserved hypothetical protein CHP00730	1.9e-62
superfamily	Putative lysine decarboxylase	1.1e-56
HMMPfam	Conserved hypothetical protein CHP00730	2.2e-44
Gene3D	no description	1.2e-58

See the detailed result >

AT5G11950.2

Model type: Protein coding
Short Description: Putative lysine decarboxylase family protein
Curator Summary: Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description: Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR