K36828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36828

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36828

Determination of introduced cDNA(s)

  • J033124L04 - Rice Full-length cDNAs - Original: J033124L04

    full reading [+] show sequence

    Nucleotide sequence: J033124L04 - full reading
    GAGCCCACTC GCCGCACATC CTCGGCGAGG TCGCCGGCGA TGGCGCCGCC 
    ACCGCCAGGG CGGCAGCGGC TGCCCTGCGA CGGCGAGGAG GACGCCCCCC
    CCCCTCTCCA CCGCCGCCGG TGAGGGCCTC CTCCGTCCAG CGATCGCTTC
    CGGCGGGACG TACGGGGCCC GCCGCGAGCC TGATATACTG GCTGCTGATG
    TAGCAGAAGA ACGTTGATTC ATGAGAAAGT AATATGGCAG AAAAGGTTTG
    ATTTCAGAGA ATCGTAATTT TGGGACAATT GGAGCTGCAT TTCTCAGCGC
    CTCCTGGCTG CAGTCTCTCT CTGGGCATTG AAGTAGACAG CAGCCACAGG
    AAGGCCAAGA TCATTCTCCT CGGCGAACCG GCGGGTGTTG AAATGGTCCC
    TGAAGGATGG CACAATTACA GTTTGCCTGC GCTTCTGCTT GAAGAGCACA
    AAAATGAACC TATGGATGCC AATGTTCGGC TTTGGACTCT CATAGCTTAT
    GACCTCGCGT CCTTCAATCG GAAAGTGGTA CAGTTGTTTA TTCACAAGGA
    GAAACTCAAT GAATAAGATG GAAAAAAAAA CTGACACAAA TTAGAGGAAG
    GACCTACCAA AAGAAGCATC CGTTGTCCCA GGTATATCAG TAACAATCCT
    GCGTAAATGT TAAGAAAAAA ATGCTTCACC ACCTGCGTGG AAGTGTCTGC
    GCCCTCAAAT GTTCATCTTT GCACACCTTG TTTATTTAGG TAAGCCCCAT
    TCAGCGTCCT CTTTTTCTGA TAAGGAAAAG AGAATTTGAT GAGTTTAATT
    GCTGTTAGAT TCTTTCCCCA AACTGTGATA CTACTTGGAT TACCATTATT
    ATCTGTTTAT TCTCTTCTTT GGAGGACTAT GGCAAAACAC CATGGAAGAG
    AATAAAGGAA GGGAACGCAG TGCTGCCACC ACTTCAATGT GTAGGGGTGC
    TGTCTAGTGC TCAGATGTCA TTTCAATGTT TAAAGATCAT ATGTTCTCCT
    TAATTGAGCC ATTAAAAAAA CTTTCTATAT TTCCATAAGT AGTGGAGCCA
    AGTACAGCTT TATGCATTCC TCTGTTCTGG TGTAATGCCA TCATGCCTAC
    TTGACACTTT GAGCAACTAG CCAAGTAGAG GTAGTGGAGC CAAGTACAGC
    TTGTGACATT TTCCGGTTCC ATTCTAATGC CATGATAATT GCTTGACACC

    Gene models with high sequence identity

    1. AT2G27550.1 [+] show detail - centroradialis
      E-value: 6e-25; Score: 112.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Phosphatidylethanolamine-binding protein PEBP 8.1e-21
    HMMPanther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 1.3e-22
    HMMPfam Phosphatidylethanolamine-binding protein PEBP 0.000069
    superfamily Phosphatidylethanolamine-binding protein PEBP 1.3e-18

    See the detailed result >

    AT2G27550.1

    Model type
    Protein coding
    Short Description
    centroradialis
    Curator Summary
    encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations.
    Computational Description
    centroradialis (ATC); CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2165 Blast hits to 2165 proteins in 308 species: Archae - 0; Bacteria - 2; Metazoa - 605; Fungi - 111; Plants - 1396; Viruses - 3; Other Eukaryotes - 48 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR