K36832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36832

Determination of introduced cDNA(s)

  • J023014L02 - Rice Full-length cDNAs - Original: J023014L02

    full reading [+] show sequence

    Nucleotide sequence: J023014L02 - full reading 
    TTGGCGCAAG GGAGAGGAGA GGAAGGAGGA AGAGGTGGTG GTGGAGGAGA 
    AGAGCCATCA GCAGCAGCAG CAGCAAGGGG AGGAGGAGCT CGTCGGCCTC 
    TCGCTCGCCG GCGGCAGGCC CAAAGTATTT CCAATGTCGA GCCCTCCACC 
    TAATCCTTCG CAACTTACAA TTTTCTATGG TGGATCAGTA TGTGTTTATG 
    ACTCAGTGCC GCCAGAGAAG GCTCAAGCAA TCATGCTTAT TGCCGCAGCA 
    GCTGCTGCAG CGGCGTCTGC CACCAAAAGC AATGCTGCCA TTGCTGTTAA 
    GCCCCCTGTG ATGCCTGCAG CCAATGCTAC CCAAGCAGCA GTCTCTCCTG 
    TGCTCACAAG ATCGCTCTCA TTGCAGAGCA CTTCTGTAGC AACTGGACAA 
    CCTCAAGTTG CCGCTGACCC TAGCTCAATT TGCAAGCTCC AGGCTGATCT 
    CCCCATTGCC AGGAGGCACT CCCTTCAGCG CTTCCTAGAG AAACGCCGTG 
    ACAGGTTGGT GAGCAAAGCT CCATATCCCA CAAAATCCTC CGAGGGCATG 
    GAAGCATCAG GGATGGAAGT AACTGCTGAG GGCAAGGCCC AGTAACTGTC 
    AACTTCGAAT GGTGGAGGCT GACGTTTGGA GGGGGAAGGA AGGAAAGGCG 
    TCGCGTTCAT TGTTTAGATG GTGTCGCACC CTAGAACCTT ACTAATAATC 
    GAACCTATGC CCTTATTATC GTTGTACTGT TCCTTATGTG CTAGTCTATT 
    CTGTCATGAA TTTGTTTACT CGAACAGCAA ACTGCTATGA TAGTAGTATA 
    TCATTGTACA TCATGCATAT CATTGCCTGA CAATGTTATC GTGTTCGTCT

    Gene models with high sequence identity

    1. AT5G20900.1 [+] show detail - jasmonate-zim-domain protein 12
      E-value: 2e-19; Score: 93.20

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tify 18.451
    HMMPfam Tify 9.9e-20
    HMMPfam CCT domain-like 5.4e-15

    See the detailed result >

    AT5G20900.1

    Model type
    Protein coding
    Short Description
    jasmonate-zim-domain protein 12
    Computational Description
    jasmonate-zim-domain protein 12 (JAZ12); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 11 (TAIR:AT3G43440.2); Has 425 Blast hits to 418 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR