K36832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36832

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36832

Determination of introduced cDNA(s)

  • J023014L02 - Rice Full-length cDNAs - Original: J023014L02

    full reading [+] show sequence

    Nucleotide sequence: J023014L02 - full reading
    TTGGCGCAAG GGAGAGGAGA GGAAGGAGGA AGAGGTGGTG GTGGAGGAGA 
    AGAGCCATCA GCAGCAGCAG CAGCAAGGGG AGGAGGAGCT CGTCGGCCTC
    TCGCTCGCCG GCGGCAGGCC CAAAGTATTT CCAATGTCGA GCCCTCCACC
    TAATCCTTCG CAACTTACAA TTTTCTATGG TGGATCAGTA TGTGTTTATG
    ACTCAGTGCC GCCAGAGAAG GCTCAAGCAA TCATGCTTAT TGCCGCAGCA
    GCTGCTGCAG CGGCGTCTGC CACCAAAAGC AATGCTGCCA TTGCTGTTAA
    GCCCCCTGTG ATGCCTGCAG CCAATGCTAC CCAAGCAGCA GTCTCTCCTG
    TGCTCACAAG ATCGCTCTCA TTGCAGAGCA CTTCTGTAGC AACTGGACAA
    CCTCAAGTTG CCGCTGACCC TAGCTCAATT TGCAAGCTCC AGGCTGATCT
    CCCCATTGCC AGGAGGCACT CCCTTCAGCG CTTCCTAGAG AAACGCCGTG
    ACAGGTTGGT GAGCAAAGCT CCATATCCCA CAAAATCCTC CGAGGGCATG
    GAAGCATCAG GGATGGAAGT AACTGCTGAG GGCAAGGCCC AGTAACTGTC
    AACTTCGAAT GGTGGAGGCT GACGTTTGGA GGGGGAAGGA AGGAAAGGCG
    TCGCGTTCAT TGTTTAGATG GTGTCGCACC CTAGAACCTT ACTAATAATC
    GAACCTATGC CCTTATTATC GTTGTACTGT TCCTTATGTG CTAGTCTATT
    CTGTCATGAA TTTGTTTACT CGAACAGCAA ACTGCTATGA TAGTAGTATA
    TCATTGTACA TCATGCATAT CATTGCCTGA CAATGTTATC GTGTTCGTCT

    Gene models with high sequence identity

    1. AT5G20900.1 [+] show detail - jasmonate-zim-domain protein 12
      E-value: 2e-19; Score: 93.20

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tify 18.451
    HMMPfam Tify 9.9e-20
    HMMPfam CCT domain-like 5.4e-15

    See the detailed result >

    AT5G20900.1

    Model type
    Protein coding
    Short Description
    jasmonate-zim-domain protein 12
    Computational Description
    jasmonate-zim-domain protein 12 (JAZ12); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 11 (TAIR:AT3G43440.2); Has 425 Blast hits to 418 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 423; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR