K36844

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36844

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36844

Determination of introduced cDNA(s)

  • J013071M18 - Rice Full-length cDNAs - Original: J013071M18

    full reading [+] show sequence

    Nucleotide sequence: J013071M18 - full reading 
    GATCGCCCAC CGATTTCATC GTGCCGTGAC TCACATGCCG CGCCGACCGG 
    GACACGTTGT GCGGTCGGTG TCGGTGGCTG CCGCGCTTTC CGACCGAGCG 
    CGACCGCACC ACAATATCAC GCCCAGGCGC GCACCGAGCC GGCCTTATCC 
    ATCTCTGGCC AGTGACCACC CCGCGCTTCA CTTCGCTTCA CTTCGGCTTC 
    GCTTCCATGG CGATCACCGC GGCCACCGCC GCCGCCGCCG CCACGCCCCA 
    CCCGTGGCAG GCCGACGCCT CGCCGCGTCG CCACGCCGCG TGCCCCGCTC 
    TCCGCGGGAG GAGGCGCCTC CCCGTCGTCA GGTACGTATT ACGTTGCCTT 
    CTGCGGCCTT GGGGGGCGCG CGCGCGCGCA CGCCAGGTGC TCGACCGATT 
    GCCTCTCTGT GCGCGGGTGG CTGAGCTGTG GTGTTTGGGG TGGGGGGGGG 
    GGGGTGGTGT TATGGTGGTT GTTGTTGTTG TTGAAGGTGC CAGTCGTCCA 
    GCGTCGACGA CAAGCCCAAG TCCAAGCGGG GCCTGCTCGA CAACGCCAGC 
    AACCTGCTCA CCAACCTGCT CAGCGGCGGG AGCCTCGGCG CGATGCCCGT 
    CGCCGAGGGC GCCGTCACCG ACCTCTTCGG CCGGCCACTC TTCTTCTCGC 
    TCTACGACTG GTTCCTCGAG CATGGCTCTG TGTACAAACT CGCTTTTGGA 
    CCCAAGGCAT TTGTTGTTGT CTCCGATCCA ATTGTTGCTA GACATATCCT 
    GCGAGAAAAT GCTTTCTGTT ATGATAAGTT ATAACCCCCG GGTTCCATGC 
    CTTATTCATA GATGCTATGG TGGGAGTATT TACTAAGTGT TCAGAGAGAA 
    CAATATTTAA GCTTGAAGAG CTTATTGAAA GGGGCGAACA TGGGGAAAAG 
    TATACCATAG TGGACCTTGA AGCTGAGTTT TCTAATTTGG CTCTCGACAT 
    AATTGGCTTG GGCGTGTTCA ATTTTGATTT TGATTCGGTT ACCAAAGAAT 
    CTCCTGTGAT CAAGGCAGTA TACGGAACTC TTTTTGAAGC TGAGCACAGA 
    TCCACTTTTT ACATTCCCTA TTGGAATCTT CCTTTAACTA GATGGATAGT 
    TCCAAGGCAA CGCAAGTTCC ACAGTGACCT CAAGGTTATT AATGATTGCC 
    TTGATAGTCT CATAAAAAAT GCAAAAGAGA CAAGACAGGA AGCTGATGTC 
    GAAAAGCTCC AGCAAAGAGA TTACTCATCA TTGAAGGATG CCAGCTTGCT 
    GAGGTTCCTT GTTGATATGC GGGGAGCTGA TGTTGACGAT CGCCAGCTTC 
    GAGATGACCT TATGACAATG CTTATTGCTG GGCATGAAAC AACTGCTGCT 
    GTTTTGACAT GGTCTGTTTT TCTACTAGCC CAGAATCCCT CCAAGATGAG 
    AAAAGCACAG GCAGAGGTTG ATTCTGTACT CAGCAATGAG ACAATTAATG 
    TGGACCAGCT CAAGAAATTG GAGTACATAA GACTGATAAT TGTTGAAGCT 
    CTTCGCTTGT ATCCCCAGCC ACCATTGTTA ATCAGGCGTG CTCTGCGGCC 
    AGATAAATTG CCAGGTGGGT ACAATGGTGC AAAAGAAGGA TATGAAATAC 
    CAGCTGGAAC CGATATATTT CTTTCGATAT ACAACCTCCA TAGATCTCCA 
    TACTTTTGGG ATCGGCCAGA TGAGTTTGAA CCAGAGAGAT TTTCAGTACC 
    AAAAAAGGAT GAGAGCATAG AAGGGTGGGC TGGTTTTGAT CCTGACCGGA 
    GTCCTGGTGC TATGTATCCT AACGAGATTT TAGCAGACTT TGCTTTCCTT 
    CCTTTTGGCG GAGGACCCCG CAAATGCGTG GGAGACCAGT TTGCACTCCT 
    CGAGTCGACA GTAGCCCTGG CCCTGCTATT GCAAAAGTTT GATGTGGAGC 
    TGCGAGGATC ACCCGATGAA GTGGAGATGG TGACAGGCGC AACAATTCAC 
    ACGAAGAGCG GGTTATGGTG CAGAGTGAGG AGAAGGACCT GATCATCCAC 
    CAGTTGGCAC CAAAAGCTGT GCTTGTGCCG TGCCGCAGCG GGATGCATGC 
    AGTGCAGGAA ACAAGAAGCA CACAGGAATA AATGCATCGA TGCAGACAAC 
    AACCAATACA AGGGTAAGTA AAGCCAGCTA CTCCTACTCC TTAGTTCTTT 
    TTTCGCTCAT GATGTGATGG TGTATAGAAG TATATACTAT TCGATTATTT 
    GTACGATGCA TACGCATCTG TGCGTGCCTC TTTGACGGCG AAAAATCGTT 
    TGGGTTGAAC TGGAAATTGT GCTGAGTTGT TACTTCATCT CAGGCTGAAA 
    CAGCACGTTT TTGCGACCTT TTTGTGGTCA GCAAATTCGC TGTCGGCCAA 
    GCTGTATGAA TAGTATGGAT GATCCAGTCC ATTTTAATCA AATCTGCACA 
    G

    Gene models with high sequence identity

    1. AT4G15110.1 [+] show detail - cytochrome P450, family 97, subfamily B, polypeptide 3
      E-value: 0; Score: 118.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome P450 4.8e-81
    PatternScan Cytochrome P450, conserved site 0
    Coil coiled-coil 0
    Gene3D Cytochrome P450 3.6e-74
    HMMPanther CYTOCHROME P450, SUBFAMILY 97B 9e-29
    HMMPanther Cytochrome P450 9e-29
    HMMPanther CYTOCHROME P450, SUBFAMILY 97B 1.7e-184
    HMMPanther Cytochrome P450 1.7e-184
    FPrintScan Cytochrome P450, E-class, group I 2.2e-16
    FPrintScan Cytochrome P450, E-class, group I 2.2e-16
    FPrintScan Cytochrome P450, E-class, group I 2.2e-16
    FPrintScan Cytochrome P450, E-class, group I 2.2e-16
    FPrintScan Cytochrome P450, C-terminal 8.2e-14
    FPrintScan Cytochrome P450, C-terminal 8.2e-14
    FPrintScan Cytochrome P450, C-terminal 8.2e-14
    FPrintScan Cytochrome P450, C-terminal 8.2e-14
    HMMPfam Cytochrome P450 3.6e-65

    See the detailed result >

    AT4G15110.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 97, subfamily B, polypeptide 3
    Curator Summary
    member of CYP97B
    Computational Description
    "cytochrome P450, family 97, subfamily B, polypeptide 3" (CYP97B3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 97, subfamily A, polypeptide 3 (TAIR:AT1G31800.1); Has 31568 Blast hits to 31460 proteins in 1570 species: Archae - 46; Bacteria - 3266; Metazoa - 11509; Fungi - 6986; Plants - 8573; Viruses - 6; Other Eukaryotes - 1182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR