K36848

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36848

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36848

Determination of introduced cDNA(s)

  • J033040P11 - Rice Full-length cDNAs - Original: J033040P11

    full reading [+] show sequence

    Nucleotide sequence: J033040P11 - full reading 
    GAGCCTCCCC CCCTCCCCCA CGACCCCCAC CCCACCCACG AACTCACGAG 
    GAGGGAAATG CTCCCCTAAA AATCCCCCAA TTGGAGCGAA GCACCGCCTT 
    GATCCCTTCC TCCCAGCCAA GCCTGCGGCC GGATCTGAGC TCCGCCGCGC 
    CGCGCGCCCT CGTAGCGATG GATCCGCGCG CGAGGTACCC TCCCGGCATC 
    GGCAACGGCC GGGGCGGGAA CCCTAACTAC TACGGCCGTG GCCCACCGCC 
    ATCGCAGCAT CAGCAGCACC AGCACCAGCA CCAGCAGCCG CCGCACCCGC 
    ACCACCACCA GTACGTGCAG CGGCAGCCGC AGCCGCAGCA AACGCCGCAC 
    AACAGCCAGC ATCAGCAGTG GCTTCGGCGG AACCAGATCG CCGCCGAGGC 
    CGCGGGCGCC AGCGAGCAGA AGGCGCCGCC TGTCGCGGAC GGCATAGATT 
    CGAGTTCACA AGACTGGAAG GCCCAACTGA AGCTCCCACC GCAAGATACA 
    CGCTACAGGA CAGAGGATGT TACTGCTACC AAGGGAAATG AATTTGAAGA 
    CTATTTTCTG AAGCGAGAAC TCCTTATGGG GATATATGAG AAAGGATTTG 
    AAAGACCTTC TCCTATACAA GAAGAAAGTA TTCCTATTGC ATTAACTGGC 
    AGTGATATTC TTGCAAGAGC AAAAAAATGG AACTGGCAAG ACTGCTGCAT 
    TTTGTATACC CGCGCTGGAA AAGATTGATC AAGACAAAAA TGCTATTCAA 
    GTTGTTATAT TGGTTCCCAC AAGGGAATTG GCTCTACAAA CATCACAAGT 
    TTGCAAGGAG CTTGGGAAAC ATTTGAAGAT TCAAGTGATG GTCACTACTG 
    GAGGAACCAG CCTAAAGGAT GATATTGTCC GTCTTTATCA ACCTGTTCAT 
    TTACTTGTTG GAACTCCTGG TCGCATTTTA GACCTTACAA AGAAAGGTGT 
    CTGCGTCCTG AAGAACTGTT CAATGCTTGT TATGGATGAG GCAGACAAGC 
    TTCTTTCTCC TGAGTTCCAA CCGTCTATTC AGGAATTGAT TCGGTATCTT 
    CCATCGAATC GGCAAATTTT GATGTTCTCT GCAACATTCC CTGTGACTGT 
    CAAGGAGTTC AAGGACAAAT ATCTCCCTAA ACCCTATGTC ATTAACCTTA 
    TGGATGAACT TACATTGAAG GGAATTACAC AGTTTTATGC TTTTGTTGAA 
    GAGAGGCAGA AAGTCCACTG TCTTAATACT CTTTTTTCCA AGCTGCAAAT 
    TAATCAATCG ATAATATTCT GTAACTCGGT AAATCGTGTT GAACTATTGG 
    CAAAGAAGAT CACAGAGCTT GGTTATTCTT GCTTCTATAT CCATGCTAAA 
    ATGTTGCAAG ACCATCGGAA CAGGGTTTTC CATGATTTTC GCAATGGTGC 
    ATGCAGGAAC TTGGTTTGTA CAGATCTTTT TACAAGGGGA ATAGATATCC 
    AAGCTGTTAA TGTTGTTATC AATTTTGATT TCCCCAAGAG CGCAGAAACA 
    TATCTCCATA GGGTTGGTAG ATCTGGCAGA TTCGGCCACC TTGGTTTGGC 
    TGTGAATTTG ATCACCTATG AGGACCGTTT TAACTTGTAT CGCATTGAAC 
    AAGAGCTTGG AACCGAGATA AAACCAATAC CACCTCAGAT AGACCGAGCA 
    ATATATTGCC AATAGTTATC TGACAGAACG ATCTTGTATG CCAATCTCTG 
    GAAGTAATAA GATAACCTGT GTAAATATCA GCTCATAAGA AAAGTCTTCT 
    GTTCATCATC ATTGAATTTC ATGCAAATCA AGGACCTTCA TGTCGTCCGA 
    AAGTTCATGG AGAACTGGTT TTGGGGCCTG TAACATTAGC TGAAAATGTC 
    TTCACATGCA GACATTTGTA TTGAGGATCT CAGGGTTTGT CGTACAGGGC 
    TCGTTATCCT GCATCTTTAG GGTATAAAAC CAGTAATGCC ATTACAAGAA 
    CAATATAACT TATGTTGGTA CTCGATAAAA TATCTCTTTA CTGTTGTTGA 
    AAGCCTCTGA CCAGCCAGGG TACAGGCCCA GATTTCCCCT GAATAGTTCT 
    CATGCGTTGT ACAGGAGTGC TTTCTAGAGT TGTATTTTGT GACATCCTTG 
    TTTTCAGTTA ACCCTGAAGG TAGATTAACG TGATATTAGC TGGCACTC

    Gene models with high sequence identity

    1. AT4G00660.2 [+] show detail - RNAhelicase-like 8
      E-value: 0; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.3e-49
    Gene3D no description 2.8e-47
    Gene3D no description 0.0000089
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 27.014
    ProfileScan DNA/RNA helicase, C-terminal 24.118
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.097
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 1e-39
    HMMSmart DNA/RNA helicase, C-terminal 1.5e-30
    superfamily P-loop containing nucleoside triphosphate hyd 3.2e-44
    superfamily P-loop containing nucleoside triphosphate hyd 9e-44
    superfamily P-loop containing nucleoside triphosphate hyd 0.000000087
    superfamily P-loop containing nucleoside triphosphate hyd 0.0000099
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 1.6e-42
    HMMPfam DNA/RNA helicase, C-terminal 1.1e-25
    HMMPanther ATP-DEPENDENT RNA HELICASE P54 6e-43
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 6e-43
    HMMPanther ATP-DEPENDENT RNA HELICASE P54 9.6e-265
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 9.6e-265

    See the detailed result >

    AT4G00660.2

    Model type
    Protein coding
    Short Description
    RNAhelicase-like 8
    Computational Description
    RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR