K36927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36927

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36927

Determination of introduced cDNA(s)

  • J033102K23 - Rice Full-length cDNAs - Original: J033102K23

    full reading [+] show sequence

    Nucleotide sequence: J033102K23 - full reading 
    GACGGCACCA GGCTCCCCCT TCTCCCTCCT CTCCGCCTCC TCCCATCCAC 
    ATCCGCGGCC GCGCCGATCG CACAGCAGCT TTGTGCGGTC GGGGTGGTCT 
    CGGTGCCGAT GGCGAGGAAG CAGCATATCG CCATATTCAC CACGGCGAGC 
    CTGCCATGGA TGACTGGAAC TGCCGTCAAC CCCCTCTTCC GAGCGGCCTA 
    CCTCGCGAAG GCCGGGGACT GGGAGGTTAC GCTGGTGGTT CCATGGCTTT 
    CGAAGGGGGA CCAGCTGCTG GTTTATCCTA ACAAGATGAA ATTCAGTGTG 
    CCCGGGGAGC AAGAAGGCTA TGTGCGACGG TGGCTCGAGG AGCGAATTGG 
    GCTGCTGCCG AAGTTTGAGA TAAAATTCTA TCCTGGAAAG TTCTCAACGG 
    AGAAAAGAAG CATTCTACCT GCTGGGGACA TCACCCAGAC TGTATCTGAT 
    GATAAAGCAG ACATTGCAGT TCTTGAAGAG CCAGAGCATC TTACATGGTA 
    CCATCATGGA CGAAGGTGGA AAAACAAATT CAGAAAAGTT ATAGGTGTTG 
    TTCATACCAA CTATTTGGAG TATGTCAAGA GAGAGAGAAA TGGATATATC 
    CATGCATTTC TCTTAAAACA TATCAATTCC TGGGTCACTG ACATCTACTG 
    CCATAAGGTT ATAAGATTAT CAGCAGCAAC TCAGGAAGTC CCAAGGTCAA 
    TAGTTTGCAA TGTCCATGGA GTAAATCCAA AATTTATTGA AATTGGTAAA 
    CTGAAGCATC AGCAGATATC TCAAAGAGAA CAAGCATTCT TCAAGGGTGC 
    ATATTATATT GGAAAGATGG TCTGGAGTAA AGGTTATACA GAACTACTCC 
    AGCTGCTTCA GAAGCACCAG AAGGAATTAT CTGGTCTTAA GATGGAGCTG 
    TATGGCAGTG GAGAAGATTC TGATGAGGTT AAAGCATCAG CCGAGAAACT 
    AAATCTTGAT GTTCGAGTCT ATCCTGGTCG TGACCATGGA GATTCCATAT 
    TTCATGACTA CAAGGTTTTC ATAAACCCAA GCACCACAGA TGTGGTATGC 
    ACGACAACTG CAGAAGCTTT GGCGATGGGG AAAATTGTGA TATGTGCAAA 
    CCATCCTTCG AATGAATTCT TCAAAAGGTT TCCTAACTGC CACATGTACA 
    ATACTGAGAA AGAGTTTGTG AGATTGACTA TGAAAGCATT GGCTGAAGAG 
    CCAATCCCAC TGTCAGAGGA ACTGAGACAT GAGCTTTCCT GGGAGGCAGC 
    AACAGAGAGA TTTGTCAGGG TTGCTGATAT TGCACCAATC ATGTCTATCA 
    AGCAGCATTC TCCCTCTCCC CAGTATTTCA TGTATATATC TCCAGATGAA 
    CTGAAGAAGA ACATGGAGGA GGCGTCGGCA TTTTTTCATA ATGCGATTTC 
    TGGGTTTGAA ACGGCCCGTT GTGTTTTTGG TGCCATACCG AATACTCTGC 
    AGCCTGATGA ACAGCAATGC AAGGAACTTG GCTGGAGGCT CCAGGAATGA 
    CAGTCATTTC TTCCCACGCT GTTGTCAATG ACAATAGAAT GCCAACTAAC 
    AGCCCAGGGA ACTTGGCTTG GGGAACTAAC TACGTAACGC AATTATCTTT 
    TGCTCCAAAA CTACGAAGGA CTGAACAGAC AAGGGTGATT CTTGTTTTCT 
    GCTATGGTGG TACACTGGTA TTGCAATTCT CCTTCACAAT TGTGGAGTGT 
    CCATCAGACA TCAGTTACTG TAATGCATCA TATCTTGGAA TTGTAAATGT 
    GCGGCAGTTG AAGTGATTAC CAATGCTGTC TTTTCATGTA GCCTGTGTAA 
    TGTAAAGCTT ACTGTTGCTT CCCGAGTTTG GCACAATTTT AAAGATATCT 
    TGTCTGGTGT TTCACAACCA TTTTTGTTGG CGTGCTGCTG CTCCTTTTCC 
    AATTAAAAAT GATCATTGTA TCCTTGTATT CCTGCC

    Gene models with high sequence identity

    1. AT4G00550.1 [+] show detail - digalactosyl diacylglycerol deficient 2
      E-value: 1e-173; Score: 607.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 2.6e-11
    Coil coiled-coil 0
    HMMPanther GLYCOSYLTRANSFERASE 5.7e-08
    HMMPfam Glycosyl transferase, group 1 2.4e-11

    See the detailed result >

    AT4G00550.1

    Model type
    Protein coding
    Short Description
    digalactosyl diacylglycerol deficient 2
    Curator Summary
    encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
    Computational Description
    digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR