K36929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36929

Determination of introduced cDNA(s)

  • J023012H08 - Rice Full-length cDNAs - Original: J023012H08

    full reading [+] show sequence

    Nucleotide sequence: J023012H08 - full reading 
    GGAAAGAAAG AAAGAGAAAA AAAAAAAATC CCCCCAAATC CCAAGGCCTC 
    CCTCTCCTCT CTCTCTCTCG CTCTCCCCTC CCCGCGCGTC GCTTTCGCCG 
    GACACCACCG CCCCCCGCCG CTTTCCCCTC CTCTCCTCTC CTCGCGTCGC 
    CTCCTTCCTT CCCTTTTTGA CCCCCCCAAT TCCCAACTGG GAATCCCCCC 
    TCGGACGGCG GCGGAAGCGG AAGCAGCAGA GGAGAGCATC TGGTTCCCCT 
    GCGCTGCCCG CTTTTTGGTG GTGGTGGCGG CGGCCGGCGG CGGATCGCTG 
    CCTCGCCGTG CCGGTAAGCA TTCTCATGAT GTACCATGCA AAGAAGTTCT 
    CTGTACCCTT TGGACCGCAG AGTACACAGA GTAACGAGCA TATGAGTAAT 
    ATTGGAGCTT TTGGCGGGTC AAACATGGGC AGCCCTGCTA ATCCTGCAGG 
    GAGTGGGAAA CAACGGCTAC GTTGGACCTC AGATCTCCAT AACCGCTTTG 
    TGGATGCTAT TGCTCAGCTT GGTGGACCTG ATAGAGCAAC ACCTAAAGGG 
    GTTCTCACTG TAATGGGTGT TCCTGGGATC ACAATTTATC ATGTGAAGAG 
    CCATTTGCAG AAATATCGCC TTGCAAAGTA CATACCAGAA TCTCCTGCTG 
    AAGGCTCAAA AGACGAAAAG AAGGATTCTA GCGATTCCCT CTCTAACACA 
    GATTCTGCAC CAGGAATGCA AATCAATGAA GCTTTGAAGA TGCAAATGGA 
    GGTCCAGAAG CGACTCCATG AACAACTTGA GGTGCAAAGG CAGCTGCAGC 
    TGAGAATTGA AGCACAAGGG AAGTACTTGC AGATGATCAT AGAGGAGCAG 
    CAAAAGCTCG GTGGATCACT CAAAGCTTGT GAGGAGCAGA AGCTACCGCA 
    TTCACCACCA AGCTTAGATG ACTACCCAGA TAGCATGCAG CCATCTCCAA 
    AGAAACCCAA GATGGACAAC CTGTCACCTG ATTCGGTACG GGATGTGACA 
    CAGTCAGATT TTGAATCCCA TTTGATTGGT CCTTGGGATC AAGAGGCTGC 
    ATTCCGAGTG GATGAATTTA AAGCTGACCC TGGTCTGAAC AAATCATAAA 
    GCAAAACCTC ACTCATCGGA AATTCTTGAT CCAAGATGTT AACCTCCACT 
    GCGGGCCGAT CGCATGTGAA TATATATCCT CTTAACAACA GAGCGAGCCT 
    TGTAAGGATC TTTGGATCCA CATCTGATTC CTTCACCACG GCCAGGTGTT 
    GTCGTCACTG TAGTATTCAT CATCATCATA CAGCTCTTGT AATTATCAGG 
    ATGTCCTAAA AGCCCTAGCA AGCAATTTTC CTTCTTTTGA AGGGAAATTG 
    CCCTGAGTTG AATCATGTAG CCAGAAAGAG TACACATTTA CACGCAATAC 
    ATTTGCTGTG AAGAGGGTGT GCCTCCCTGA AGTTATATGT GAATGATTTG 
    TGTTAGATTC ATAGTTAGAA TTTGGCCTTC TCTCTTCTAC TGCTAAGTGC 
    TGCTCAGAAT CAAGAAAAAG GAGTAATGAT TAAAATGAAG GGTTAGGTTC 
    TAGCTTTTGT TTTGACGTTT GACAAAGTAA GGTCTGGTTT GGTTTACGAT 
    CAATGTAAAA CCTTACCAAA ACATTTGTAT GCTAAATCGG GGTACTGACA 
    AAATTTTGGC GAAGTCAGTT ATTGGTTTGC TGCCAACATT TTTCTAGGCT 
    GTCTGGTTAT AGTTTGGTTT GAAGACAACT GAAGTTCCAA GTCCCAACCA 
    TATGCTCTGC AAAAATTTAG CAATGTATGA GTTGTCACTA CTAAAATTTA 
    GTACAGCAAA TTAAATGGTA GTC

    Gene models with high sequence identity

    1. AT2G01060.1 [+] show detail - myb-like HTH transcriptional regulator family protein
      E-value: 6e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Homeodomain-like 2.6e-16
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 10.742
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 3e-32
    Gene3D Homeodomain-related 7.9e-20
    HMMPfam Myb, DNA-binding 4.9e-14

    See the detailed result >

    AT2G01060.1

    Model type
    Protein coding
    Short Description
    myb-like HTH transcriptional regulator family protein
    Computational Description
    myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR