K36929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36929

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36929

Determination of introduced cDNA(s)

  • J023012H08 - Rice Full-length cDNAs - Original: J023012H08

    full reading [+] show sequence

    Nucleotide sequence: J023012H08 - full reading
    GGAAAGAAAG AAAGAGAAAA AAAAAAAATC CCCCCAAATC CCAAGGCCTC 
    CCTCTCCTCT CTCTCTCTCG CTCTCCCCTC CCCGCGCGTC GCTTTCGCCG
    GACACCACCG CCCCCCGCCG CTTTCCCCTC CTCTCCTCTC CTCGCGTCGC
    CTCCTTCCTT CCCTTTTTGA CCCCCCCAAT TCCCAACTGG GAATCCCCCC
    TCGGACGGCG GCGGAAGCGG AAGCAGCAGA GGAGAGCATC TGGTTCCCCT
    GCGCTGCCCG CTTTTTGGTG GTGGTGGCGG CGGCCGGCGG CGGATCGCTG
    CCTCGCCGTG CCGGTAAGCA TTCTCATGAT GTACCATGCA AAGAAGTTCT
    CTGTACCCTT TGGACCGCAG AGTACACAGA GTAACGAGCA TATGAGTAAT
    ATTGGAGCTT TTGGCGGGTC AAACATGGGC AGCCCTGCTA ATCCTGCAGG
    GAGTGGGAAA CAACGGCTAC GTTGGACCTC AGATCTCCAT AACCGCTTTG
    TGGATGCTAT TGCTCAGCTT GGTGGACCTG ATAGAGCAAC ACCTAAAGGG
    GTTCTCACTG TAATGGGTGT TCCTGGGATC ACAATTTATC ATGTGAAGAG
    CCATTTGCAG AAATATCGCC TTGCAAAGTA CATACCAGAA TCTCCTGCTG
    AAGGCTCAAA AGACGAAAAG AAGGATTCTA GCGATTCCCT CTCTAACACA
    GATTCTGCAC CAGGAATGCA AATCAATGAA GCTTTGAAGA TGCAAATGGA
    GGTCCAGAAG CGACTCCATG AACAACTTGA GGTGCAAAGG CAGCTGCAGC
    TGAGAATTGA AGCACAAGGG AAGTACTTGC AGATGATCAT AGAGGAGCAG
    CAAAAGCTCG GTGGATCACT CAAAGCTTGT GAGGAGCAGA AGCTACCGCA
    TTCACCACCA AGCTTAGATG ACTACCCAGA TAGCATGCAG CCATCTCCAA
    AGAAACCCAA GATGGACAAC CTGTCACCTG ATTCGGTACG GGATGTGACA
    CAGTCAGATT TTGAATCCCA TTTGATTGGT CCTTGGGATC AAGAGGCTGC
    ATTCCGAGTG GATGAATTTA AAGCTGACCC TGGTCTGAAC AAATCATAAA
    GCAAAACCTC ACTCATCGGA AATTCTTGAT CCAAGATGTT AACCTCCACT
    GCGGGCCGAT CGCATGTGAA TATATATCCT CTTAACAACA GAGCGAGCCT
    TGTAAGGATC TTTGGATCCA CATCTGATTC CTTCACCACG GCCAGGTGTT
    GTCGTCACTG TAGTATTCAT CATCATCATA CAGCTCTTGT AATTATCAGG
    ATGTCCTAAA AGCCCTAGCA AGCAATTTTC CTTCTTTTGA AGGGAAATTG
    CCCTGAGTTG AATCATGTAG CCAGAAAGAG TACACATTTA CACGCAATAC
    ATTTGCTGTG AAGAGGGTGT GCCTCCCTGA AGTTATATGT GAATGATTTG
    TGTTAGATTC ATAGTTAGAA TTTGGCCTTC TCTCTTCTAC TGCTAAGTGC
    TGCTCAGAAT CAAGAAAAAG GAGTAATGAT TAAAATGAAG GGTTAGGTTC
    TAGCTTTTGT TTTGACGTTT GACAAAGTAA GGTCTGGTTT GGTTTACGAT
    CAATGTAAAA CCTTACCAAA ACATTTGTAT GCTAAATCGG GGTACTGACA
    AAATTTTGGC GAAGTCAGTT ATTGGTTTGC TGCCAACATT TTTCTAGGCT
    GTCTGGTTAT AGTTTGGTTT GAAGACAACT GAAGTTCCAA GTCCCAACCA
    TATGCTCTGC AAAAATTTAG CAATGTATGA GTTGTCACTA CTAAAATTTA
    GTACAGCAAA TTAAATGGTA GTC

    Gene models with high sequence identity

    1. AT2G01060.1 [+] show detail - myb-like HTH transcriptional regulator family protein
      E-value: 6e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Homeodomain-like 2.6e-16
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 10.742
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 3e-32
    Gene3D Homeodomain-related 7.9e-20
    HMMPfam Myb, DNA-binding 4.9e-14

    See the detailed result >

    AT2G01060.1

    Model type
    Protein coding
    Short Description
    myb-like HTH transcriptional regulator family protein
    Computational Description
    myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR