K36930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36930

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36930

Determination of introduced cDNA(s)

J023043O20 - Rice Full-length cDNAs - Original: J023043O20

full reading [+] show sequence

GACTACCACC ACCGGCAGTG CGCCACCAAC CCGAGAAAAC GTCGCCGTTA 
ATACAACTAG CCACGCTAGC CTGCCCGCGT CGGTGTCGGC GCCAAGTCGC 
GGCGCGGCGT GGCGTGGCGA GGACGCGCAC CATGGCGGCG ACACTGGCGC 
AGGAGCCGCG CCACCACCCG TCGCGCCCGC CGCTCGCGCC GGCCGCCGCC 
CACGCGCCCA ACTCCGCCGC CGCCGCGTGC TCGACACCTC GCCGCGGCAA 
AACCAGCCCC CACGCCTCCT CCCGCCATGC CTCCTCCTCC TCCTCTTCCT 
CCTCCCTCCC TTCGTGCTCC GCCGCGCGCG TCGCGGTCAC CCCCGCGCCG 
CACGCCACGG CCACCGCTCC CGTGACGATG CGGATGCGGA GCCTGTCGGT 
GTCGTTCCAG GGGGAGTCGT TCGTCTACGA GACGCCCCGC GCGGCGGCCC 
CGCGGCGCGC GCCTGCTGCT GCTGCTGCTA GGCCGAGGCC GACCACCCGA 
CGGAGAGGCG AGGCCGAGAA CGAGCGGCCG TCGCCGCCGC CGGCGTCGAA 
GGCGACCGAC GCGCTCGCGC GCAGCCTCGA CTGCAGCCTC CACCGCAAGG 
AGTCCATCCT CGCCGCCGTT CGCCTCCTGC GCAGCTCAAT CTCTCCCGGC 
AACGCCGCCG CCGCCGCCGC GCCCGACGCG GACGCGGCCA CCGACACCGA 
CACCGACGCC GCGCCGCCCA GTATCCCCAC GCAGACGAGG TTCTGGCAGG 
AGACGAACAG CCGCCTGCGG CGGCTACCGG AGTCCGGGCT GCCGCACCCG 
ATCTCCACCT CCCGGAAGCC ATTCTTGGAC GGCCCAATCT CGCCGACGCT 
GCTGGAGACC TCGCCGGCGA ACGCGCCGTC CATCATCAGT TTCGCGACGG 
CGGTGAGGAG GGCGAACAAA GGGGAGGACA AGATCGAGGA GGCGCACAGG 
CTGCGGCTGC TCGACAACCG CCAACTGCAG TGGCGCTGCC TCAACGCTCA 
CGCCGACGCC GCCGCCGTTG CCCGGAGCTG CGCTGCCGAG GTGAGTCACG 
GTGACCTCTG CCAGTTGCAA TTTTTCAGAG ATTTTAGCTT AAATTGCTGA 
TGCACTGATG CTCATACTGA AATTACCCAT GGTGAGCAGA TTGGCCTTTT 
TTTTTTTTGG TCTGTGCTGA ATTTTTGTCA TTCACATCGA TTTTTAATCG 
AATTACATAC TTGTAGAATA CGGGAGCATG ATGCTTTGAT GAATTTTCAC 
TATTTTAGAG GTTCGATTTT TCTAACAAGA CCTGTAGAAG GGCACATTGA 
GCACATTTCC TTCTGGTTTA CTCAAGCAAG TCGGTATTTA TTAGCTGGAT 
CAGTAAGAAT GATTGCACAT TGCATTTGAT GATTTGGTTA GTAGTTGGTA 
TCATGTCTTG AGTATATATT GACCTGACAA TTCTGTTGCG TAGGTTTTGT 
CGAACTATAG TACACAATAT TAAGGATATG TTATTTATAT TCTTCTGTGT 
TGTCGATGTG CAATATTTGT AAATACATAC TCATTCCGAA TCGAGAACCA 
TATGATTCAG AGAAAAGGTA TTCTCACCAT TGTCGATCCT CAATTTGTCA 
CATCCTGTTA TAATTATTAT TACTGCTATT CTGTACATCG CTTCATTGCA 
CCATCATCTT CAATATATGT AGAGCCACTG GTAATGCAAT CTGTAGATGT 
TTTGTCGGTC ATATTTTGAA AAATAGAAAC TAGGCTAGTA ATACATTCCT 
GACAGAAATG CAGGAAAAGT ATTATTTGTA ACTCAAATTA AAAGATGAAT 
TGTGATTGAA GAACATTTCC TAGCCAGTGC CTGCCATAAA CAGGAAACTA 
AAATGTAAAA TAAAAATTTA AACACTTGAA TTAAACAAAA ACAAGTGCTG 
TATATCCCAT TGTTCATGCT AATTTCGATG

Gene models with high sequence identity

AT1G49890.1 [+] show detail - Family of unknown function (DUF566)
E-value: 1e-09; Score: 62.40

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF566	2.6e-45
Coil	coiled-coil	0

See the detailed result >

AT1G49890.1

Model type: Protein coding
Short Description: Family of unknown function (DUF566)
Computational Description: Family of unknown function (DUF566) ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G19570.2); Has 9198 Blast hits to 4153 proteins in 422 species: Archae - 34; Bacteria - 1349; Metazoa - 2630; Fungi - 1436; Plants - 341; Viruses - 197; Other Eukaryotes - 3211 (source: NCBI BLink).
Link: InterPro Scan - TAIR