K36946

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36946

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
T2  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36946

Determination of introduced cDNA(s)

  • J013094H12 - Rice Full-length cDNAs - Original: J013094H12

    full reading [+] show sequence

    Nucleotide sequence: J013094H12 - full reading 
    GTCTCATCAT CCACCACAAC ATCTCCTCCA ATCAGCAGCA GCAGCAGCAG 
    AGCTGATCAC CATCACTTCG GAGCTTGTCA GCACAAGGCT AATTATTAAG 
    CTAGGGCTCG ATCGATCTGA TCGTGATCTG ATCTGATCTG ACCATCAGCA 
    GCCATGTCGT TTAGGTGTAA GGGCGGCGTC GCTTGGGTTG CTCTGCTCGT 
    CGCTGTCGCG GCTCTCGCCT CCGCCGCTCA GGGATTTCCA AATCCCTTCG 
    GTCACGAGGA GTTCACGGAG AGTTACTACG ACGAGACGTG CCCCAACGCG 
    CAGAGCATCG TGCGCTCGGT CATGGAGCGC CACGCCGCCG CCAACCCCCG 
    CACGGCGCCG GCCATCCTCC GCCTCTTCTT CCACGACTGC TTTGTCAACG 
    GTTGTGATGC CTCCATCCTT CTGAACGCTA CGGACTCCAT GGAGAGCGAG 
    AAGGATGCCG AGCCCAACGC CACCCTCGCC GGCTTCGACG TGATCGACGG 
    CATCAAGTCC GAGCTCGAGC GCAGCTGCCC GGCCACCGTC TCCTGCGCCG 
    ATGTTCTCGC GCTCGCCGCC CGCGACGCCG TCGCCATGCT CGGTGGGCCC 
    AGCTGGGGCG TGCTCCTCGG CCGCAAGGAC TCCCTCACCG CCAGCATAGA 
    CATGGCCAAA GAGGATCTCC CGAACCCGAA AGACAGCCTG GCCGAACTCA 
    TCAGGATGTT CAAGGAGCAC GACCTCGACG AGCGTGACCT CACCGCGCTC 
    TCCGGTGCAC ACACCGTCGG CATGGCACAT GACTGCAAGA ACTACGACGA 
    CCGCATCTAC AGTCGCGTCG GCCAGGGCGG CGACAGCATC GACCCATCCT 
    TCGCGGCGCT GCGCAGGCAG GAGTGCGAGC AGAAGCACGA CAAGGCCACG 
    GCACCGTTCG ACGAGCGGAC GCCAGCCAAG TTTGACAACG CCTACTACGT 
    CGACCTGCTC GCGAGGCGGG GGCTCCTCAC CTCTGACTAG GAGCTCTACA 
    CCCAGGGCTG CCAGACCGGC GACCTGGTGA AGACGTACGC CATGAACGGC 
    GACGTGTTCT TCGCCGACTT CACAAGAGCG ATGGTGAAGA TGGGGAACAT 
    ACGCCCAAAG CATTGGTGGA CTCCGGCGGA GGTCAGGCTC AAGTGCTCGG 
    TGGCCAACAC ACATTGTTGA TGCTCATACT GTTGAGTACA ACACAATTAT 
    GTTGCACTCA TTTATAAGTG TGATATTTCC TTTCGATTTA ATTGTGCATT 
    AAACTGTAAG ATGTATTTTT CTTTTGTACC TCAATTTTTT TATTCATTTT 
    TTTATAATGT ATGGGAGATC ACTTTGCCTT G

    Gene models with high sequence identity

    1. AT3G50990.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 61.088
    ProfileScan Haem peroxidase, plant/fungal/bacterial 9.058
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.3e-67
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Plant peroxidase 7.1e-52
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 5.3e-33
    Gene3D no description 1.1e-58
    superfamily Haem peroxidase 1.3e-80
    superfamily Haem peroxidase 0.00000000061

    See the detailed result >

    AT3G50990.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G66390.1); Has 4558 Blast hits to 4529 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 246; Plants - 4242; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR