K36951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K36951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K36951

Determination of introduced cDNA(s)

  • J023128K16 - Rice Full-length cDNAs - Original: J023128K16

    full reading [+] show sequence

    Nucleotide sequence: J023128K16 - full reading 
    GGGTCTGGAG CAACAGATCT ATCCATCCAT CCCATCCTCG ATCCTTCATT 
    CCTGCCCGGC GGCGAGCGAG AGAGAGGCGG AGGAGATCCG AGATGGCGGG 
    GAGCGGGTGG AGGAGGATCC CGGCGGTGAG GAGGCCGCCC ATGTCGCGCC 
    CGGCCTCGGT CTGCCTCTGG ATCGTGCTCG TCGCCGCCAC CCTGGCGCTC 
    GCCCAGGCGA AGAAATCGAA GGCGGATTTG ACTGAGGTCA CCCACAAGGT 
    CTACTTCGAC GTCGAGATTG ATGGCAAGCC CGCAGGACGG GTTGTCATGG 
    GACTTTTCGG GAAGACTGTT CCTAAAACGG CAGAGAACTT CCGAGCACTT 
    TGCACAGGAG AGAAAGGAAC TGGAAAGAGT GGCAAAGCAC TCCACTTCAA 
    GGGAAGTGCA TTCCACAGAA TTATACCCAG CTTTATGATC CAAGGAGGTG 
    ACTTCACACT TGGTGATGGA AGGGGTGGTG AATCTATCTA TGGGACGAAG 
    TTCGCCGATG AAAACTTCAA GATCAAGCAC ACCGGACCAG GCCTCCTGTC 
    CATGGCCAAT GCTGGGAGAG ACACAAACGG GTCCCAGTTT TTCATCACCA 
    CTGTAACCAC CAGCTGGTTG GACGGGAAGC ACGTCGTGTT CGGTAAGGTG 
    CTGTCTGGAA TGGATGTGGT TTACAAGATT GAAGCTGAGG GCCAGCAGAG 
    TGGGTCACCG AAGAGCAAAG TTGTCATCGC GGACAGCGGC GAACTGCCGA 
    TGTAATGAGC TGAAATGATG TTTCACTGAA GCTACTGCTA CTGCTTCTCG 
    TTGTAGAACT GTTATTAGCT GCTCTGTTTT GCTATGCTTC TACCCCGAAT 
    CTGGTTGGAG TAAATTTCTG TTAGACTATA ACAGCGTGCT ATATCGCCTC 
    TTAGTTGTGG GCGATTTGGA GTGAACTAGC ATAAAAAGGT CGAAACTTTA 
    CTTAAGTCGT CTTCTTGTTC TAAGTCGAAT TATACTTTGA AGTGACTTGC 
    TTACTGTTGA GCGCTTG

    Gene models with high sequence identity

    1. AT5G58710.1 [+] show detail - rotamase CYP 7
      E-value: 6e-80; Score: 294.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.3e-44
    HMMPanther CYCLOPHILIN 1.9e-113
    HMMPanther CYCLOPHILIN 1.9e-113
    superfamily Cyclophilin-like 3.4e-70
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-63
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.5e-39
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 44.217

    See the detailed result >

    AT5G58710.1

    Model type
    Protein coding
    Short Description
    rotamase CYP 7
    Curator Summary
    Encodes cyclophilin ROC7.
    Computational Description
    rotamase CYP 7 (ROC7); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR