K37015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37015

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37015

Determination of introduced cDNA(s)

  • J013036P17 - Rice Full-length cDNAs - Original: J013036P17

    full reading [+] show sequence

    Nucleotide sequence: J013036P17 - full reading 
    GGGTCGCCGC CCCGTCTCCT CGCTTGCCGG TTACAAGGAC GACCTCGTCG 
    GGGCGGCGGA ACCCTCCAGC CTCCGGGCTC GCCGCCGCCG CCAAGCTCGC 
    ATCCCGCGCC GGCCGCCGAG CTCGCCGCCC AACCCCAACC CCAAATCAAT 
    CAGATCAATT CAACTATCCA AGCCTAAGTT GTTGGATCTA GAATCCATGG 
    CGATCGTTTA CGCGGTGGTG GCGCGTGGCA CCGTGGTTCT CGCCGAGTTC 
    TCTGCCGTCT CCGGGAACGC CGGCGCCGTC GCCCGCCGCA TCCTCGAGAA 
    GCTTCCGCCC GACGCCGAGT CGCGCCTCTG CTTCGCGCAG GACCGCTACA 
    TCTTCCACGT CCTCCGCTCC CCTCCCCCCG CCGCCGCCGA TGGCCTCACC 
    TTCCTCTGCA TGGCCAACGA CACCTTCGGA AGACGAATTC CCTTTCTTTA 
    CCTCGAGGAC ATCCAAATGA GGTTCATCAA GAACTATGGC AGAATCGCCC 
    ATAATGCGCT CGCCTATGCC ATGAACGATG AGTTCTCTAG GGTCCTCCAT 
    CAGCAAATGG AGTACTTCTC CAGCAACCCC AGCGCCGACA CACTCAACCG 
    TCTCCGTGGG GAAGTCAGTG AGATACATAC TGTCATGGTT GACAACATTG 
    AGAAGATTCT CGACAGAGGT GAGCGCATCT CGCTACTCGT CGACAAGACC 
    TCCACCATGC AAGACAGTGC TTTCCACTTC CGCAAGCAAT CCAGGAGGCT 
    CAGGAGAGCT CTTTGGATGA AAAATGCCAA GCTTCTTGCT GTGTTGACAG 
    CTGTCATAGT ACTTCTACTT TACTTGATCA TCGCTGCTTT CTGTGGAGGC 
    CTTTCTCTTC CATCGTGTAG ATCATGATCC GCTCTACAGA TTTACCTCAA 
    TTAAAGCATC ACACCATGTA ACAACAATGC AAGTCTATCA ATGCCATGTG 
    TCGTATCTGT TCAGCACCCA AAGTTACAAG TGATGTTTTG AGAAAATGAT 
    TTGGTGCTGA GTTTTCGTTG TCGGGAGGGT TGTGCTCCTT CAAGTTAATA 
    TGGAACGGTT TGTACAAAAT GGGATCTATA TGTACAGTAG TATGTCGTTT 
    GTTGTTTGTG TTGGCTAAGA CTTTTCTGTA CCGTTGTGCT TGCACATGAA 
    TTGGATGTTT TGCCTGGTGA TATGAGTGCT GTGGTATGCC CTTTCCTTAA 
    CTAAAGCGAA TGGCATGTAA TATTCTCAAG AGAATATATG AATATGGTTT 
    ATGAGT

    Gene models with high sequence identity

    1. AT5G22360.1 [+] show detail - vesicle-associated membrane protein 714
      E-value: 9e-91; Score: 330.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.4e-21
    PatternScan Synaptobrevin 0
    superfamily Longin-like 3.6e-32
    HMMPfam Synaptobrevin 6.9e-31
    ProfileScan Longin 30.907
    ProfileScan Synaptobrevin 17.801
    HMMPanther VAMP-7 4.9e-100
    HMMPanther SNARE PROTEINS 4.9e-100
    FPrintScan Synaptobrevin 8.5e-15
    FPrintScan Synaptobrevin 8.5e-15
    FPrintScan Synaptobrevin 8.5e-15

    See the detailed result >

    AT5G22360.1

    Model type
    Protein coding
    Short Description
    vesicle-associated membrane protein 714
    Curator Summary
    Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
    Computational Description
    vesicle-associated membrane protein 714 (VAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2317 Blast hits to 2315 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 487; Plants - 553; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR