K37025

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37025

Determination of introduced cDNA(s)

  • J023135D02 - Rice Full-length cDNAs - Original: J023135D02

    full reading [+] show sequence

    Nucleotide sequence: J023135D02 - full reading 
    GTGCCGCCTC GTCATCGACT TCATCGCTGG AAGCCTGGGA CTGCCTTACC 
    TCAGTGCGTA CCTCAACTCG ATAGGAAGTA ACTTCACACA AGGTGCTAAC 
    TTTGCAACGG CCGGGTCGTC AATCAGAAGG CAGAACACAT CTTTGTTCCT 
    CTCTGGTTTC AGCCCCATTT CCTTGGACGT GCAGTCCTGG GAGTTTGAAC 
    AGTTCATCAA CAGAAGCCAG TTCGTCTATA ACAACAAAGG TGGAATCTAC 
    AGGGAGCTCC TACCCAAGGC TGAATACTTC TCTCAGGCGC TCTACACATT 
    CGATATCGGC CAGAATGACA TTACCACAGG CTTCTTCATA AACATGACCT 
    CTGAACAAGT CATAGCTTAC ATCCCTGATC TAATGGAAAG GCTCACGAAC 
    ATAATCCAGA ATGTGTACGG TCTCGGAGGA AGGTACTTCT GGATTCACAA 
    CACGGGGCCG ATCGGCTGCC TGCCTTACGC CATGGTGCAC CGCCCCGACC 
    TCGCCGTCGT CAAGGACGGG TCCGGCTGCT CCGTCGCCTA CAACGAGGTC 
    GCCCAGCTCT TCAACCAGAG GCTGAAGGAA ACCGTGGGCC ACCTCCGGAA 
    GACCCACGCC GACGCCGCGT TCACCTACGT CGACGTCTAC TCCGCCAAGT 
    ACAAGCTGAT CAGCGACGCC AAGAAGCTCG GGATGGATGA CCCGATGCTG 
    ACGTGCTGCG GCTACGGCGG CGGGAGGTAC AACTTCGACG ACAGGGTCGG 
    GTGCGGCGGG AAGGTGAAGG TGAACGGGAC GTGGGTGGTG GCGGGGAAGT 
    CGTGCGACGA CCCGCTGAAG CGGGTGAGCT GGGACGGCGT GCACTTCACC 
    GAGGCGGCGA ACAAGTTCGT GTTCGACCAG ATCGCCGGCG GCAAGCTCTC 
    CGACCCGCCG GTGCCTCTCA GGCAGGCCTG CCAGATCAGC AGAGGGCAGT 
    GAATCGTCGC CGCCGGTGCG GGTGCATCGA GCCGTCGTCA GGTTGGCTGT 
    GCCGTACTGC CATTTCTGCT GCTGCTGCTG CCTCTGGCTT TGTAAGTGTG 
    CAATATTGCA GAGGCATATG GTTGATATAA AGTACATATA CTGCTTCCTT 
    TGTGCAATAA AGGGAGAATG AGATTC

    Gene models with high sequence identity

    1. AT3G26430.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 2e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 1.1e-05
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 1.1e-05
    HMMPfam Lipase, GDSL 2.5e-35

    See the detailed result >

    AT3G26430.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: alpha-fucosidase 1 (TAIR:AT1G67830.1); Has 3218 Blast hits to 3172 proteins in 104 species: Archae - 0; Bacteria - 74; Metazoa - 0; Fungi - 6; Plants - 3136; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR