K37027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37027

Determination of introduced cDNA(s)

  • J033051H11 - Rice Full-length cDNAs - Original: J033051H11

    full reading [+] show sequence

    Nucleotide sequence: J033051H11 - full reading 
    GCTGCTTTCG CTCGATTTCG GGGGCGGATC AGACGGCCGC GAGCGAATCC 
    GGGGATCTCC CCCCTCCCTC CCGCTCTGTT CCTGCCTCTG CTCCCCGCCC 
    GTTTCCTCTC AATCCTTCCT TCTCCCTGCT TCTCTCCCTC GCGGAAAAAA 
    AAAAGAAAAG AAAAGGAAAA GGGGGAGTGG AAAAGATCTC CTCTTCGTCC 
    TGTTTCTGTT GGCGTCGCTG CTCGGCAGCT CGTTCGCTAG CTACCACCCA 
    AAAGGCGGCA GTCGATCGCC TGATAGCTCA GCCGCTCTCC TCTGTCGCTT 
    CCGAGCTCTT GTGCCGCCGC GCGCCGGCGA GGATCTGTCG ACCGAGAGAG 
    GAGCCACCCG CCGTCCAAGA AGAGGAGGAA GAAGATCATC TTTGCGTCAG 
    AAGGAGCAGT GACGAGATAC CACTGTCCGC GTGGTCACAA GCATTGCTGC 
    GAGACTGTGA TTGGCGGGAG TTGCTTTGGA TGAGCAATAG CCTGATGGTG 
    GCTTGCTAAC TGGGAAGGAG GATTTGCGCG GTTCTGGACT ACTCGAGAGG 
    CTAGGAAATG CTTGCGTGCA TCGCGTGTTC GACCAAGGAC GGCGGGGAGG 
    GCGGGCACCG GTCCGCCACC GCCACGCCCA ACTCCGGCAA GTCTCTGACT 
    TCACAGTTGA AGGACATGGT GCTCAAGTTC TCCGGCAGCG GCAGGCACCA 
    ATACAAGTCC GGCGGGAGCC CGTCGTTGAG GACCAGCCGC TTCCACCGCT 
    CCAGCCGCCT CGCCGCGTAC CCGGGCATCA TCGACGAGTC GGGCTTCACG 
    TCGGACGGGG CCGGCGAGGC CTATACTTAC ATGAGGACGA CGACGGCGAG 
    CGCCGGCGCC CGGGCCGCGC CGTCGACGTG GGACTTGCCG CCCAAGGTGA 
    ACCACCGCAG CTTCCAGCCG CGCGTGATCA GGAGCCCGAG CGCGAGCGGG 
    GTACCGAGCA TCGGGGAGGA AGACTACGAC GACGACGACG ACGACGATGA 
    CGAGGAGACA GTCCTCCTGG AGGAGGACCG CGTGCCGCGG GAGTGGACGG 
    CGCAGGTGGA GCCCGGCGTG CAGATCACCT TCGTCTCCAT CCCCGGCGGC 
    GCCGGCAACG ATCTGAAGCG CATCCGTTTC AGCCGGGAGA TGTTTAACAA 
    GTGGGAGGCG CAGCGGTGGT GGGGGGAGAA CTACGACCGC GTGGTGGAGC 
    TCTACAACGT GCAGACGTTC AGCCGGCAGC AGGGCTTCTC GACGCCGACG 
    TCCTCCGTCG ACGAAGCCAT GCAGAGAGAT TCGTTCTACT CCCGCGTCGG 
    CTCGACGAGG GAGAGCCCGG CGATGATGAT GCCGCCGCCG CCGCCGCTGC 
    CGTCGTCGGG TGCTGGCAGG GAGCACCCGA TCAGCCGGAC AGCGTCGAGC 
    AAGGCGCAGC TGTCGTCGTC GTCGTCGGTG GCGGCGGCTC GGCCGCCGTT 
    CTACCCGTCC ACGGCCGTGC CGGACCCGTC CGACCACGTG TGGGCGCACC 
    ACTTCAACCT CCTCAACTCC GCGGCCGCCG GACCAGCGGC GCCGTACGAC 
    CCGTCGCGCG GCACGACGTC GTCCCGGGAC GAGGCGTCCG TGTCCATCAG 
    CAACGCGAGC GACCTGGAGG CCACGGAGTG GGTGGAGCAG GACGAGCCTG 
    GGGTGTCCAT CACCATCCGC GAGTTCGGCG ACGGCACCCG CGAGCTCCGC 
    CGCGTCCGGT TCAGCCGCGA GAGATTTGGC GAGGAGCGGG CCAAGGTGTG 
    GTGGGAGCAG AACCGGGACC GGATACACGC GCAGTATCTG TGAGCTAACG 
    CGAGACCCAT CGTTGATGAG AGTGAAGTGA TACTGTGACA GAAGCTAACG 
    CGTCGCCGGG AAGAATAGTT AAGAGTGTGA TGATACTACT ACTTTGCCGC 
    TGCTACGGTT AGTGCTACTA GGTTTTTTTT ACAGGGTGAA TATAGGATGA 
    GGGGGAAGGA TGCTGTGGTC TGAGAAGCAG CAGGCTCAGT CAAGCTGCTA 
    CTCTTGTTAA CTGACCACTT TGGTCTTCCG TTTGTAACCT TTATGGACAG 
    GGTGTTCGTT TAATTCGTTT GTTTTAGCAT GGTTTCATGT GATCCTCGAC 
    GGC

    Gene models with high sequence identity

    1. AT1G31880.1 [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
      E-value: 3e-56; Score: 217.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Disease resistance/zinc finger/chromosome condensation-like region 1.8e-17
    HMMPfam Disease resistance/zinc finger/chromosome condensation-like region 5.1e-18
    HMMPanther REGULATOR OF CHROMOSOME CONDENSATION-RELATED 1.5e-16
    HMMPanther REGULATOR OF CHROMOSOME CONDENSATION 1.5e-16

    See the detailed result >

    AT1G31880.1

    Model type
    Protein coding
    Short Description
    DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
    Curator Summary
    Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
    Computational Description
    BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR