K37030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37030

Determination of introduced cDNA(s)

  • J023107G12 - Rice Full-length cDNAs - Original: J023107G12

    full reading [+] show sequence

    Nucleotide sequence: J023107G12 - full reading
    GGCAAAAACA CCGAAGGTCC CCGTATGAGG AGGCAGCTCG TGCTCGGGCG 
    GCGAGACTGA GACGAGACGC GAGACCAAAC CCTCCCCTCC CCGACCGCGC
    CCCGCCCAGA TCTCGCCGCC GACGAGATGC ATCGCCGCGG CGGCCACCAC
    CTCCACCTCC TCCTCGCCGC CGCCGTCGTC CTCCTCCTCA CCGTCGCGGG
    GCTGCCCCTC GCTTCCGCCT CCGAGTCCGA CCACAAGTAC AAAGCTGAAG
    AAACGGTTAA ACTCTGGGTA AACAAGGTTG GCCCGTACAA TAACCCGCAA
    GAAACTTACA ACTATTACAG CCTCCCATTT TGTCAGCCAT CTGAAAACCC
    CGCACACAAA TGGGGTGGTC TCGGAGAGGT CCTTGGCGGC AATGAGCTGA
    TCGATAGTCA GGTTGATATA AAGTTTTTAA AAAATGTGGA GAAGGGTCCC
    ATTTGCACAA TTGAACTTGA TGACAACAAG ATTCAACAAT TTACTGATGC
    CATTGAAAGG TCATATTGGT TTGAACTCTT CATAGATGAT CTTCCATTAT
    GGGGTTTTGT TGGTGAGACT GACAAAAACA ACGAAAATAA GCACTACCTC
    TACACACACA AGAACATTGT TGTTAAATAC AATGGTAACA GGATAATTCA
    TGTCAATCTT ACTCAAGAGT CACCTAAGCT TCTTGAAGCT GGCAAAAAAT
    TGGACATGAC CTATTCAGTG AAGTGGGTGC AAACAAACGT TGCATTTGCA
    CGACGTTTTG AAGTTTACTT GGACTACCCG TTCTTTGAAC ATCAGATCCA
    TTGGTTCTCC ATCTTCAATT CGTTCATGAT GGTTATTTTC TTGACTGGAT
    TGGTATCAAT GATATTGATG AGGACGCTGA GAAATGATTA TGCGAAATAT
    GCTCGTGAAG ATGATGATCT GGAGTCGCTT GAAAGAGATG TTAGTGAGGA
    ATCTGGTTGG AAGCTTGTCC ATGGAGATGT TTTCCGGCCT CCTCGTAGCT
    TGGTGTTTCT TTCTGCTTTT GTTGGTATTG GCACTCAGCT GGCGGCTCTT
    ATTCTGCTCG TGATTGTATT GGCCATTGTT GGCATGTTAT ATGTTGGACG
    AGGAGCTATC ATCACGACCT TCATCGTGTG CTACGCCCTT ACATCTTTCA
    TTTCTGGATA TGTTAGTGGT GGTCTCTACT CAAGGAATGG CGGCAAAAAC
    TGGATAAAGT CTATGATCCT TACTGCATCC CTTTTTCCGT TCTTGTGCTT
    TTCGATTGGA TTGGTGTTGA ACACCATTGC TATCTTCTAC CGTTCACTGG
    CAGCCATACC ATTTGGCACA ATGGTTGTCA TATTTGTCCT GTGGGCTTTC
    ATCTCTTTTC CTTTGGTTCT ATTGGGAACT GTAGTTGGTA GAAATTGGAG
    TGGTGCTCCC AACAATCCCT GTCGTGTTAA GACAATTCCA CGTCCTATTC
    CTGAGAAGAA GTGGTATCTT ACACCCTCTG TTATCTCATT GATGGGTGGA
    CTACTCCCCT TCGGCAGCAT CTTCATCGAG ATGTACTTTG TGTTTACTTC
    ATTCTGGAAC TACAAGGTTT ATTATGTATA TGGTTTCATG CTGCTGGTTT
    TTGTTATCCT CATAATAGTC ACCATATGTG TCACTATTGT GGGTACTTAT
    TTCTTGTTGA ATGCTGAGAA TTACCATTGG CAATGGACAT CATTCTTCTC
    CGCTGCATCT ACTGCCTTGT ATGTCTACCT ATACTCAATA TACTATTATC
    ACGTGAAGAC AAAGATGTCT GGCTTCTTCC AGACAAGCTT CTACTTTGGC
    TACACCTTGA TGTTCTGCCT CGGACTAGGA ATTCTTTGCG GTGCTGTTGG
    CTATCTAGGA TCTACTCTCT TTGTGAGGAG AATCTACAGA AACATCAAAT
    GCGACTAAAT TGCTACTCTG AACATCAAAT GTGACCAAAG GGCTACTCCG
    TTGCCGATAG ATCCTATCAG CGAAGTGTGT GTTGCTGGCG CAGGTCCATT
    GTGGAGTAAT GCTCATAAGA TTCTGATCAA CTTTTGGAAG CTATACAGGA
    GATTGTTCTC CCTTTGTTTT ACCTTTTCTT TTTATGTTTT TCTTTTACTT
    CATTTTTCTT CTTGGAGCTG GCCTCATAAA TGTATACCTC ATTAGTTCAG
    GAATTAGTCT CAGTACCGGG AAGTACATTT AGATTCTCAT TTTGTGGTGG
    CCTCTTTTGG CCAGTAGTAG GATATCATTG ATGAATATTG GTGCAGTGTG
    GATCCAATCC AGTGGCTAGA ATTGCCCCTC TTATGAATCG CTATACATCC
    AATTTTGGCA TAGCCTTGTA GTATATGCAA ACTAATACAT TCAAGTTAGA
    TATATATGGC CTGAATGGGT GAAGTTCTAT TTCTTCCCCT GCAGGTACTG
    TTGAAACATG AATTCGACAT GATTATTATT TAGCCTTTGG TCTGAGTTTT
    CATCCTTGCC G

    Gene models with high sequence identity

    1. AT1G10950.1 [+] show detail - transmembrane nine 1
      E-value: 0; Score: 868.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nonaspanin (TM9SF) 9.7e-185
    HMMPanther ENDOMEMBRANE PROTEIN EMP70 0
    HMMPanther Nonaspanin (TM9SF) 0

    See the detailed result >

    AT1G10950.1

    Model type
    Protein coding
    Short Description
    transmembrane nine 1
    Curator Summary
    Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
    Computational Description
    transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR