K37030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37030

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37030

Determination of introduced cDNA(s)

  • J023107G12 - Rice Full-length cDNAs - Original: J023107G12

    full reading [+] show sequence

    Nucleotide sequence: J023107G12 - full reading 
    GGCAAAAACA CCGAAGGTCC CCGTATGAGG AGGCAGCTCG TGCTCGGGCG 
    GCGAGACTGA GACGAGACGC GAGACCAAAC CCTCCCCTCC CCGACCGCGC 
    CCCGCCCAGA TCTCGCCGCC GACGAGATGC ATCGCCGCGG CGGCCACCAC 
    CTCCACCTCC TCCTCGCCGC CGCCGTCGTC CTCCTCCTCA CCGTCGCGGG 
    GCTGCCCCTC GCTTCCGCCT CCGAGTCCGA CCACAAGTAC AAAGCTGAAG 
    AAACGGTTAA ACTCTGGGTA AACAAGGTTG GCCCGTACAA TAACCCGCAA 
    GAAACTTACA ACTATTACAG CCTCCCATTT TGTCAGCCAT CTGAAAACCC 
    CGCACACAAA TGGGGTGGTC TCGGAGAGGT CCTTGGCGGC AATGAGCTGA 
    TCGATAGTCA GGTTGATATA AAGTTTTTAA AAAATGTGGA GAAGGGTCCC 
    ATTTGCACAA TTGAACTTGA TGACAACAAG ATTCAACAAT TTACTGATGC 
    CATTGAAAGG TCATATTGGT TTGAACTCTT CATAGATGAT CTTCCATTAT 
    GGGGTTTTGT TGGTGAGACT GACAAAAACA ACGAAAATAA GCACTACCTC 
    TACACACACA AGAACATTGT TGTTAAATAC AATGGTAACA GGATAATTCA 
    TGTCAATCTT ACTCAAGAGT CACCTAAGCT TCTTGAAGCT GGCAAAAAAT 
    TGGACATGAC CTATTCAGTG AAGTGGGTGC AAACAAACGT TGCATTTGCA 
    CGACGTTTTG AAGTTTACTT GGACTACCCG TTCTTTGAAC ATCAGATCCA 
    TTGGTTCTCC ATCTTCAATT CGTTCATGAT GGTTATTTTC TTGACTGGAT 
    TGGTATCAAT GATATTGATG AGGACGCTGA GAAATGATTA TGCGAAATAT 
    GCTCGTGAAG ATGATGATCT GGAGTCGCTT GAAAGAGATG TTAGTGAGGA 
    ATCTGGTTGG AAGCTTGTCC ATGGAGATGT TTTCCGGCCT CCTCGTAGCT 
    TGGTGTTTCT TTCTGCTTTT GTTGGTATTG GCACTCAGCT GGCGGCTCTT 
    ATTCTGCTCG TGATTGTATT GGCCATTGTT GGCATGTTAT ATGTTGGACG 
    AGGAGCTATC ATCACGACCT TCATCGTGTG CTACGCCCTT ACATCTTTCA 
    TTTCTGGATA TGTTAGTGGT GGTCTCTACT CAAGGAATGG CGGCAAAAAC 
    TGGATAAAGT CTATGATCCT TACTGCATCC CTTTTTCCGT TCTTGTGCTT 
    TTCGATTGGA TTGGTGTTGA ACACCATTGC TATCTTCTAC CGTTCACTGG 
    CAGCCATACC ATTTGGCACA ATGGTTGTCA TATTTGTCCT GTGGGCTTTC 
    ATCTCTTTTC CTTTGGTTCT ATTGGGAACT GTAGTTGGTA GAAATTGGAG 
    TGGTGCTCCC AACAATCCCT GTCGTGTTAA GACAATTCCA CGTCCTATTC 
    CTGAGAAGAA GTGGTATCTT ACACCCTCTG TTATCTCATT GATGGGTGGA 
    CTACTCCCCT TCGGCAGCAT CTTCATCGAG ATGTACTTTG TGTTTACTTC 
    ATTCTGGAAC TACAAGGTTT ATTATGTATA TGGTTTCATG CTGCTGGTTT 
    TTGTTATCCT CATAATAGTC ACCATATGTG TCACTATTGT GGGTACTTAT 
    TTCTTGTTGA ATGCTGAGAA TTACCATTGG CAATGGACAT CATTCTTCTC 
    CGCTGCATCT ACTGCCTTGT ATGTCTACCT ATACTCAATA TACTATTATC 
    ACGTGAAGAC AAAGATGTCT GGCTTCTTCC AGACAAGCTT CTACTTTGGC 
    TACACCTTGA TGTTCTGCCT CGGACTAGGA ATTCTTTGCG GTGCTGTTGG 
    CTATCTAGGA TCTACTCTCT TTGTGAGGAG AATCTACAGA AACATCAAAT 
    GCGACTAAAT TGCTACTCTG AACATCAAAT GTGACCAAAG GGCTACTCCG 
    TTGCCGATAG ATCCTATCAG CGAAGTGTGT GTTGCTGGCG CAGGTCCATT 
    GTGGAGTAAT GCTCATAAGA TTCTGATCAA CTTTTGGAAG CTATACAGGA 
    GATTGTTCTC CCTTTGTTTT ACCTTTTCTT TTTATGTTTT TCTTTTACTT 
    CATTTTTCTT CTTGGAGCTG GCCTCATAAA TGTATACCTC ATTAGTTCAG 
    GAATTAGTCT CAGTACCGGG AAGTACATTT AGATTCTCAT TTTGTGGTGG 
    CCTCTTTTGG CCAGTAGTAG GATATCATTG ATGAATATTG GTGCAGTGTG 
    GATCCAATCC AGTGGCTAGA ATTGCCCCTC TTATGAATCG CTATACATCC 
    AATTTTGGCA TAGCCTTGTA GTATATGCAA ACTAATACAT TCAAGTTAGA 
    TATATATGGC CTGAATGGGT GAAGTTCTAT TTCTTCCCCT GCAGGTACTG 
    TTGAAACATG AATTCGACAT GATTATTATT TAGCCTTTGG TCTGAGTTTT 
    CATCCTTGCC G

    Gene models with high sequence identity

    1. AT1G10950.1 [+] show detail - transmembrane nine 1
      E-value: 0; Score: 868.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nonaspanin (TM9SF) 9.7e-185
    HMMPanther ENDOMEMBRANE PROTEIN EMP70 0
    HMMPanther Nonaspanin (TM9SF) 0

    See the detailed result >

    AT1G10950.1

    Model type
    Protein coding
    Short Description
    transmembrane nine 1
    Curator Summary
    Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.
    Computational Description
    transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR