K37103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37103

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37103

Determination of introduced cDNA(s)

J023043F15 - Rice Full-length cDNAs - Original: J023043F15

full reading [+] show sequence

GAATGTATCA TCATTCATCA GCAAAACAGA CGAACAGGTT GAGGAGTGTC 
ATATTCTGGT GATGGAAGCG GAAGCAGCCG ACGGCTTGGG GCGCCGCCTT 
GTCAAGCATC ATCCACCGCC GGGGGAGGAA GCGGCCGTCC ATGGCGCCGC 
TCTGCGAGCA GCGGGGATCC ACCGAGCACA GCCGCCACGG CCGGCACACG 
GCGCGGAAGC GGATGTAGTC GGCGACGTCG TTGGCGAGGA CGCGCTCGGC 
GATCAACCCG GCGGCCCCTC CCCACCAAGC AAATGCTGGA GCAATGATGC 
TGGACAGCTG GAGGCCTGGA GCAAATGGAT GTTGATAACC AGATTGCTAA 
GCTGATGGTG GAGCTCTCCC GCATCAAGAT TGTGAAATTG GGGATGGTAC 
CACTGCGATG GTGGTCATGT TTGGATCACT TCTAGACCAA GCTGAGAAAC 
TGTTAGAATA TGGAAACGAA ATGATTATTG AGGAGACCAA GTGAAGTATT 
CATGATGCTC TGTGTGGCTA GGAATCTGAT TCGCAAGAAC TCTATTGTTT 
ATGGTGGTGG CTCAGCTCAG ATATCATGCT CAATCTATTA TATTATTAAA 
GGAATAGAAA AAGGAGTCTC CACGTTCGCT CTCATGGCCT AGAAATTCTC 
ACATTAATCG GAGAAAAAGA AAAAGCAGAG TCCATATAGA AATACAATTT 
AGAAAGAGCT GAAATTCGGA ATTAAAAAAA TAAGAAATAT TAGAAGAGGA 
GACTAGAGTC CATATAGAAA TACAATTTAG AAATAATTGA AATTCGGAAT 
TAAAAATATA AGAAATATTA GAAGAAGAGA CTAGAGTCCA TATAGAAATA 
CAATTAGGAA ATAACTGAAA TTCAAAATTA AAAATAAGGA ATATTAGAAG 
TAGAGTATAG AGTCCATATA GAAATACAAT TAGGAAACAA TAGAAATTCG 
GAATTAAAAA TAAGGAATAT TAGAAGTAGA GTATAGAGTC CATATAAAAA 
TACAATTAAT ACAATTAAGA AAAAAAATAG AAATACGGAA TTAAAAAATA 
AGAAATATTA GAAGTAGAGT ATAGAGTCCA TATAAGAATT TAAAACTAAC 
TAAAATTCGG AATAAACATA GTAAAATTAA AAGTAAAGTT TTGAGTCCGT 
ATAAAAATAC AATTTACAAA TAACTAAAAT TCGAAATTAA GAAAAACATG 
GGAAGAAGAG TTTAAAGTCA ATATAGGAAT ACAATTTAGA AGTAACTGAA 
ATTCGAAATT AAAAATTAAA TAATATTGAG AGATGAGTTT AGAGTCCACA 
TAGAAACACA ATTAAAAATA ATAAAAATTC AGAAATAAAA ATAAATAATA 
TTAGAAGAAG AGCCTAAAGT CTATATAGAA ATACAATTTA CAGAAAATTC 
GGAATTAAAA AAAGAAATAT TAAAAGACAA GTCTAGAGTC CATATAGGAA 
TATATATAAT TTACAAATAA CTAAAATTTG ATATTAAAAA TAATTACTAA 
CCAACACGTA TATAAAATAC AATATGAATA TTACTCATTT GTAGTTTCGT 
AAAGTTATTG CAAAATTTAA AATTATGATA TCATTTTAAT ATATTTGAAT 
AATATAATGA GAAAACATAT ATGCTATTAT ATGAGAGAAA ATATAATGAT 
GCTAGCCGAG CAATCTGCGC GGGTCACCAT GCTAGTTGCT GTTAAAACTG 
CAGCAGATCA ACAGCCTGGA GTTGACCAAA TCTCCCTGAG ACGTCTCTCC 
CACACATCGC TCATGCCATT TGAGGTGCAT TGGATGGGAT CCCACTAGCC 
CTAGCTGAAA ACAGTGGTTT GCCCCCTTTT GATACGTCGA CTGCAGTAAA 
TCCTCAGCAA GTGAAGTTTT TTTTTTTTTT GCCTCCTGAA CTACCTTTGC 
AAGATAGCAA TCCTCATCAT GGTATTGACT GCAATTGCAT TCGAACAAAC 
GGCATCAGAG AACAAAACAA GCAGCAGCAG ATCGTGCTGA CAACTCAGGT 
GGTGAAAATG ATTCTCAAGA TTGATGACAT TATCACACAG TCTGACTGCT 
GAATGCTGAT GACAACCTGC CCAGCTGGGG TGATGCAACA TGGTAAGAAA 
AGCAAGGCAA TTTTTCCTGG CTCTAATTAA TCAGCATTTG GTGTGCTTGA 
GCTTTCGACC GGACAGCATG CTCTCGATGG AAGCCTTCCA GACCTTGCAG 
TGCATCTGGT TGTCCAGCAG CAGCTGCACC GTCCCTGCTG CCGTGCTCAG 
CGCCACGGGG AAGAACTTCC GACAATCCAC CACCGCCTCG CCACCGCCAG 
AGACTGCCAA CACCTCATCT GGACCAAGCA CAAACAACAG GGTTCAGGCA 
TCATCACCGA CAAGCAGAAC GAAGATCAAT ACACTAGTGG CAAGCAGTTC 
AGCTGGTTCA TGCAGGTAAA TTTTTTTAAT TATTACAGTG CTGGTATGTT 
GTGAATGCTC CATGCAGGCG CTTCTTCCCC AGCCTCAGAG CCACCGTGCC 
GCACTCCGGG AAGACGGCCA CCGTCCTCAG CCGCAACCTT CCTGCAAACC 
CTGAGAATTG TGCCTTTCTG AATGCTAGCT GTATTGGTGC TCATCATCAT 
CATGGAGTTG CTGGTGCTGC TGCTGATCCC TCTGCTGACG TCTGCTCTCA 
GCTTCAGCAC AGCTGCTCCT CTCAGACCTG GAAAAAGCAT ACAAGAAGCT 
CAGCATCATA GCATCACGGT GGCGGTGAGG GTGAGCAGCT CGGCGGGGGA 
GCGGCTGTCG AGGCCGGCCT TCACGGCGGA GGTGACCCGG GACCTGTCGG 
CACCGGCAGA CTCCGCGAAC TCGGCACAGA CGGTGGCCAC CAGCGCGGCA 
GCCGAGGCAA GCACCGTGCT CAGCTTCCTG TCAGCCCCAG CACCCCCAGA 
GCTGCTCCTC AGCTCGCAAG CTGACACGAC GCCGGCGATC GCAGCTGCGA 
GCTGGGCCAC CGAGACGGCG GCGTGGGCCT GCGCCGTGTG CAGCCGGAGC 
TCGTCGCGCC TCTTCCTCCG ACTCCCGGCG ATGGGGATGC TGTCCATCAA 
GTATCCTCTC AGAATTGCCC TCATGTGTCC CATGTTCAGC TGCTCATTTT 
CAGTGGAAAC CAAAAGCTTT CGTCAATTCA CTTCACTGTG CCAGATCCGA 
CAAAGC

Gene models with high sequence identity

AT1G24510.1 [+] show detail - TCP-1/cpn60 chaperonin family protein
E-value: 1e-20; Score: 27.30

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Chaperonin Cpn60/TCP-1	4.70000326671344e-23
superfamily	Chaperonin Cpn60/TCP-1	0.0000011
HMMPfam	Chaperonin Cpn60/TCP-1	0.11
HMMPanther	T-complex protein 1, epsilon subunit	4.70000326671344e-23
HMMPfam	Pleckstrin-like, plant	0.0000000000001
HMMPfam	Pleckstrin-like, plant	0.00000000014
HMMPfam	Protein of unknown function DUF828	6.5e-40
HMMPanther	T-complex protein 1, epsilon subunit	0.000000024
HMMPanther	Chaperonin Cpn60/TCP-1	0.000000024

See the detailed result >

AT1G24510.1

Model type: Protein coding
Short Description: TCP-1/cpn60 chaperonin family protein
Computational Description: TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 18150 Blast hits to 18008 proteins in 3818 species: Archae - 807; Bacteria - 8763; Metazoa - 2077; Fungi - 1503; Plants - 864; Viruses - 0; Other Eukaryotes - 4136 (source: NCBI BLink).
Link: InterPro Scan - TAIR