K37108

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37108

Determination of introduced cDNA(s)

  • J023016F09 - Rice Full-length cDNAs - Original: J023016F09

    full reading [+] show sequence

    Nucleotide sequence: J023016F09 - full reading 
    GACCGTCTCA TCCCAGCCGC CGCCGCCGCA GCCTCCTCCT CTCGTCTTCT 
    CCTTCGAGTT GTTAGCTCCC TCCTTATTCA ACCGTGGGTA AGGAGAAGAC 
    GCACATCAAC ATTGTGGTCA TTGGCCACGT CGACTCCGGC AAGTCGACCA 
    CCACGGGCCA TCTGATCTAC AAGCTTGGAG GTATCGACAA GCGTGTGATC 
    GAGAGGTTCG AGAAGGAAGC CGCTGAGATG AACAAGAGGT CCTTCAAGTA 
    CGCGTGGGTG CTCGACAAGC TCAAGGCCGA GCGTGAGAGA GGTATCACCA 
    TTGATATCGC CCTGTGGAAG TTCGAGACCA CCAAGTACTA CTGCACGGTC 
    ATCGATGCCC CTGGTCACCG TGACTTCATC AAGAACATGA TCACGGGTAC 
    CTCCCAGGCT GACTGTGCCG TGCTCATCAT TGACTCCACC ACTGGTGGTT 
    TTGAGGCTGG TATCTCCAAG GATGGCCAGA CCCGTGAGCA CGCTCTTCTT 
    GCTTTCACTC TTGGAGTGAA GCAGATGATC TGCTGCTGCA ACAAGATGGA 
    TGCCACCACT CCCAAGTACT CCAAGGCCCG TTATGATGAA ATCGTGAAGG 
    AAGTCTCATC CTACCTGAAG AAGGTCGGCT ACAACCCTGA CAAGATTCCC 
    TTTGTTCCCA TCTCTGGGTT TGAGGGTGAC AACATGATTG AGAGGTCCAC 
    CAACCTTGAC TGGTACAAGG GCCCCACCTT GCTTGAGGCT CTTGACCAGA 
    TCAACGAGCC CAAGAGGCCA TCAGACAAGC CCCTACGTCT TCCCCTTCAG 
    GACGTGTACA AGATCGGCGG TATTGGTACC GTGCCTGTGG GTCGTGTTGA 
    GACTGGTGTC CTCAAGCCTG GTATGGTGGT GACCTTTGGT CCCAGCGGTC 
    TGACCACTGA GGTCAAGTCG GTTGAGATGC ACCACGAGGC TCTCCAGGAG 
    GCTCTTCCTG GTGACAACGT TGGGTTCAAC GTGAAGAACG TTGCCGTGAA 
    GGATCTGAAG CGTGGGTACG TGGCCTCTAA CTCCAAGGAT GACCCTGCCA 
    AGGAGGCTGC CAGCTTCACC TCCCAGGTGA TCATCATGAA CCACCCTGGG 
    CAGATCGGCA ATGGCTACGC CCCAGTGCTG GACTGCCACA CCTCACACAT 
    TGCCGTCAAG TTTGCTGAGC TGGTGACCAA GATCGACAGA CGATCCGGCA 
    AGGAGCTGGA GAAGGAGCCC AAGTTCCTCA AGAACGGTGA TGCTGGTATG 
    GTTAAGATGA TTCCCACCAA GCCCATGGTT GTGGAGACCT TCTCTGAGTA 
    CCCTCCTCTT GGTCGTTTTG CCGTGCGTGA CATGAGGCAA ACGGTGGCTG 
    TTGGCGTCAT CAAGAACGTG GAGAAGAAGG ACCCAACCGG TGCCAAGGTG 
    ACCAAGGCTG CCGCCAAGAA GAAATGAGCA TCGTTGAAGT GGTGGTTATG 
    CTGGCTGCAT TTGAGATATC TTAGCGTTCG TTAAGTTTTG CCCACGGCCA 
    TGGCACTCGT TGCATGGACC GTTAATATCT GCTCGCAATG TGCACTATGT 
    TAGTCGTTTA AAACTCGTTT ATTTCTATTC GGTTAAAAAC TTGGATGCTC 
    TGAGTCTTAT TGTTGCCCTT CGGTTGTTGT GGAATGCGAG TACTTACAGT 
    GCT

    Gene models with high sequence identity

    1. AT5G60390.3 [+] show detail - GTP binding Elongation factor Tu family protein
      E-value: 0; Score: 854.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein synthesis factor, GTP-binding 0
    HMMTigr Translation elongation factor EF1A, eukaryotic/archaeal 1.1e-291
    BlastProDom Q46515_DESMO_Q46515; 8e-07
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    FPrintScan Protein synthesis factor, GTP-binding 1.5e-23
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-84
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 2.5e-41
    superfamily Translation elongation/initiation factor/Ribosomal, beta-barrel 4.6e-33
    Gene3D no description 2.2e-58
    Gene3D no description 3.6e-31
    Gene3D no description 1.2e-45
    HMMPanther ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) 0
    HMMPanther TRANSLATION FACTOR 0
    HMMPfam Protein synthesis factor, GTP-binding 5.8e-56
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 6.8e-33
    HMMPfam Translation elongation factor EFTu/EF1A, domain 2 2.4e-17

    See the detailed result >

    AT5G60390.3

    Model type
    Protein coding
    Short Description
    GTP binding Elongation factor Tu family protein
    Computational Description
    GTP binding Elongation factor Tu family protein; FUNCTIONS IN: calmodulin binding, translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion, nucleus, cytoplasm; EXPRESSED IN: cotyledon, male gametophyte, guard cell, pollen tube, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EF1A, eukaryotic/archaeal (InterPro:IPR004539); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT1G07940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR