K37119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37119

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37119

Determination of introduced cDNA(s)

  • J023091C22 - Rice Full-length cDNAs - Original: J023091C22

    full reading [+] show sequence

    Nucleotide sequence: J023091C22 - full reading 
    GACTTGCCAG GCTATTGTTA AGAGCACTAT TGGCATTGGT GTTGATGAGG 
    AAGACAGAAA ACGCACATGG GTTGCCGATG CTGAGGAATG CAAGAAGCGT 
    GGTTCAATTG AGACAGCCCG TGCCATCTAT GCGCATGCAC TCAGTGTCTT 
    CGTTTCCAAG AAGAGTATTT GGCTGAAAGC GGCTCAGCTT GAGAAGAGCC 
    ATGGAACCAA GGAGTCTCTT TATAATCTCC TCAGAAAGGC TGTTACCTAC 
    AATCCACGTG CAGAAGTTTT ATGGCTTATG AGTGCAAAGG AGAAATGGCT 
    GGCTGGAGAT GTCCCGGCTG CCCGAGCCAT TCTTCAGGAA GCTTATGCTT 
    CTCTCCCCAA TTCAGAGGAG ATCTGGCTAG CTGCCTTCAA GCTTGAGTTT 
    GAGAGCAATG AACCAGAGAG AGCAAGAATT CTTTTGTCAA AGGCCAGGGA 
    AAGAGGAGGC ACTGAGAGGG TCTGGATGAA ATCTGCGATT GTTGAAAGGG 
    AGTTAGGGAA TGTAGACGAA GAAAGGAAGC TGTTGGAGGA AGGTCTGAAG 
    TTATTCCCCT CATTCTTCAA GCTGTGGTTA ATGCTTGGAC AAATGGAAGA 
    CCGGCTTGGC CATGGATCCA AGGCAAAGGA GGTTTACGAG AATGCACTGA 
    AGCACTGCCC GAGTTGCATC CCTCTTTGGC TCTCTCTAGC TAATCTAGAG 
    GAGAAGATAA ATGGCTTGAG CAAGTCACGT GCTGTCCTCA CCATGGCAAG 
    AAAGAAGAAC CCAGCTACAC CTGAACTCTG GCTTGCAGCA GTTAGGGCTG 
    AATTGAGACA TGGGAACAAG AAGGAAGCTG ATGCTCTACT AGCCAAGGCA 
    TTACAGGAAT GCCCGACAAG TGGTATTTTG TGGGCTGCAG CTATAGAGAT 
    GGTGCCACGT CCCCAGCGTA AAGCAAAGAG CTCAGATGCT ATAAAACGAT 
    GTGACCATGA TCCCCATGTC ATTGCAGCTG TGGCCAAACT TTTCTGGCAT 
    GATAGGAAGG TTGATAAAGC TAGAAGTTGG TTGAATAGAG CTGTTACTCT 
    TGCTCCAGAC ATTGGAGATT TTTGGGCCTT GTACTACAAA TTTGAACTGC 
    AACATGGAAA TGCTGATACA CAAAAGGATG TCCTACAAAG ATGTGTTGCA 
    GCAGAACCAA AGCATGGAGA GAGATGGCAA GCAATAACAA AGGCTGTTGA 
    GAACTCACAT CTGTCAATTG AGGCCCTTCT GAAGAAAGCT GTGTTGGCTC 
    TTGGCCAGGA AGAAAATCCA AATGCTGCAG ATCCCTAGTT TGTCTCACTT 
    TTAACTTTTG ATAAGTCTGG TCACAGGTCT AATTCTTCTG CGCATGCTGG 
    CAATGGAATA TATAGAGAAA GAAACACAGT TGGGTAGTGA ACTGGGATGG 
    ACTCGAGCTG CGACCTCGTG ATTCTGTGTA CCACCGAACT GATTGCTGCA 
    CTCCTCCAAC CATGAAGCCT TACCTGAAGA AGAATCAGGC ATGCGATTAC 
    TACAATTTGT ATCGGCGATC ACCAGTTAAA ACCTGTATCG TTTGTATGCC 
    CTAATTGCCA GCAATACTTC TGTACTACCA TGAGCATGTT TATTCCTCCA 
    GATGCATACC ACAAATTCTT AGATGGGTGT ATTTGCTAGC CGCGACTTGG 
    GATGATGTAA TTTTTCTTGG GTTCGGTTTA TTCTCAGAGC ACTGGCGTCT 
    GTATCTACGA CTGTAAGATC TGCCTGAATG TCGGCTTAAT ATATGAGATA 
    ATGCCCCATT TTTCAGC

    Gene models with high sequence identity

    1. AT4G03430.1 [+] show detail - pre-mRNA splicing factor-related
      E-value: 0; Score: 644.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 7e-49
    Gene3D Tetratricopeptide-like helical 0.00022
    Gene3D Tetratricopeptide-like helical 1e-20
    HMMPanther PRE-MRNA SPLICING FACTOR 1.7e-182
    HMMPanther PRE-MRNA SPLICING FACTOR 1.7e-182
    HMMSmart RNA-processing protein, HAT helix 0.00061
    HMMSmart RNA-processing protein, HAT helix 6.3
    HMMSmart RNA-processing protein, HAT helix 57
    HMMSmart Tetratricopeptide repeat 63
    HMMSmart RNA-processing protein, HAT helix 0.013
    HMMSmart Tetratricopeptide repeat 0.9
    HMMSmart RNA-processing protein, HAT helix 0.0017
    HMMSmart RNA-processing protein, HAT helix 65
    HMMSmart Tetratricopeptide repeat 410
    HMMSmart RNA-processing protein, HAT helix 3.6
    HMMSmart Tetratricopeptide repeat 150
    HMMSmart RNA-processing protein, HAT helix 1.2
    HMMSmart RNA-processing protein, HAT helix 460
    ProfileScan Tetratricopeptide repeat-containing 17.143
    ProfileScan Tetratricopeptide repeat-containing 6.7

    See the detailed result >

    AT4G03430.1

    Model type
    Protein coding
    Short Description
    pre-mRNA splicing factor-related
    Curator Summary
    Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.
    Computational Description
    EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR