K37201

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37201

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37201

Determination of introduced cDNA(s)

  • J033125A18 - Rice Full-length cDNAs - Original: J033125A18

    full reading [+] show sequence

    Nucleotide sequence: J033125A18 - full reading
    GACTCTCATC ACTGATTACA CCCAACAACA ACACAATCCA ACCATCAACC 
    ATACTACACC AGAACACAAC AATGGCGTCC CAACGCCGGC GATCATCCGC
    CGCCACCATC GCCGTCTTCT TCTTCCTCCT CTCCTTGTTA GCGGTGTTCT
    TCCAGCCGGC CGCCGCCTAC TACCACCCTC AGGGGAAGAG GCAGACCGTC
    GCCGTCTTCT GGGGACGCAA CAAGGCCGAG GGCTCGCTCC GGCAAACCTG
    CGACACCGGC GACTACAACA TCGTCATCAT CTCCTTCCTC AGCGTCTTCG
    GCCATGGCAA GTACTGGCTC GACCTCTCCG GCCACGACCT CCGAGACGTC
    GGCGCCGACA TCCGCCACTG CCAGTCCAAG GGCGTCTACA TGCTCCTCTC
    CATCGGCGGC GACGGCGACG GCTACTCCCT CCCTTCCTCC AAGTCCGCCG
    CCGACGTCGC CTACAACCTC TACCACTCCT TCCTCGGCCG CCCACGCGCC
    GGCATCTTCC GCCCCTTCGG CGACGACACC ATCGTCAACG GCGTCAACTT
    CTTCATCGAC CACGGCCCCG GCGACCACTA CGACGACCTC GCCAACCGCA
    TCAACGACTA CAACCAGAAC ATCCACGACC CCATCGGCAT CATGCTGACG
    GCGACGGTGA GGTGCTCGTA CCCTGACCCG AGGATGAAGA AGGCGCTGGA
    CACCAAGCTG TTCACGCAGA TCCACGTGAG GTTCTACGAC GACCCGAGGT
    GCTCGTACAA CCACGCGGGG CTCGCCGGCG TCATGGCGCA GTGGAACAGG
    TGGTCGGCGA GGTACCCAAA CAGCCGGATC TTCCTGGGGC TCGCGGCGGC
    GAACGTGACG GGGAAGAACG ACATGGTCGG CGTCGGGGAG CTCAGCCGGA
    AGCTGCTGCC GGCGGTGCAG AAGACGGAGA GCTACGCGGG AGTGACGCTC
    TGGAACAGCT ACTACGACTC CAAGACTCAC TACGGAAGAT ATGTCAAGCA
    CTGGGCTTAA TTTAATCAAT TAATTTAAGC TCAGATCAAC CAGCTATAAT
    AATCTACTAC AGTGCATGCA GCTCAATCAC TATCGCAGTA ATCACGGTGT
    CATGGGTTTA ATGTAGTAAA CTACCCCCAC TTAATTACAT GTTGTTTGTT
    GTTTTTTGAT CTTGGTCTCG AGAGCAAGTG TTTTTTTTAT TTGCACAACT
    CTAGTGTGTC ATATATGCAT GTGTGATCGA TGTATCTGTA CTTTTCTTTT
    TCCCTTTTTT CCTTTTTGCA ACTGTGTATG TATTGATGTA TAATGAAGTT
    GTACATGATG TTTAATG

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 2e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.4e-10
    superfamily Glycoside hydrolase, catalytic core 8.2e-69
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.4e-85

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR