K37202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37202

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37202

Determination of introduced cDNA(s)

  • J013066O10 - Rice Full-length cDNAs - Original: J013066O10

    full reading [+] show sequence

    Nucleotide sequence: J013066O10 - full reading 
    GCTGGGTTCG TGCGACGGGA CCTCGATTCG TCCATCCAGC TTCCACTACC 
    CCTCCGCGCG CTGCCTAGAT CTTTCCTCTC TCTCGCACCC TCTTATTGGC 
    GGAGGAGGAG GAGGGATGGT GCGGGAGGTT GCGGAGAGCT GTGTCGACGG 
    GGTGGTGATG GAGATGGTGG CGGCCTACTG CGGCCGCTTC TACGCCGCCA 
    AGCCGGAGCT CGCCGCCCGC CGCATCGAGG CCATCGGCTT CCAGGTCGGC 
    CACCAGCTCA CGGAGAGATA TACCATGGAG CGCCCTCGAT TTAGTGATCA 
    TCTTGAAGCA ATCAAATTTA TCTGCAAAGA CTTTTGGTCA GAGCTATTCA 
    AGAAGCAGAT TGACAATCTT AAAACTAATC ATAGGGGAAC ATTTGTTCTT 
    CAAGATAACC GTTTCCGGTG GCTTACTCGT GTTTCTATAG ATCCATCTGT 
    AGAGAGCATG GATGCAACTG ACAATGACTC TGCAACACTA GGGGATAGCG 
    CAGCCCAAAC AACAAGCATG CTTCTGTACT TTCCATGCGG GATAATAAGA 
    GGTGCCTTGA CCAATTTGGG TATTTCGTGT TCTGTCACTG CAGACATGTC 
    CAACCTTCCA GCATGTGAGT TGCACTACTC CTTTTCATGA CCTTTACTTT 
    GCATGCAACT CCATGAGGTT GCAAAATGCA CTGGATGGTA CTCCTTCTGT 
    TTTCATATAA TTATTGCCAT TAGCTTTATT TTTCAAACTC ATTAAACATG 
    GAATACCTCA AGGGAAAAAT ATTAAAGTAT TTTGAATGAT AAATGTTATA 
    GTATTATTCT TTCCTACTAA CTAAAAAAAT TAAAATACTA CTTGTCAAAT 
    GTTGAATAGT ATAGTCATGC TCATTGCTGT TAAAAAAGGC TGGGCCAGTA 
    CTTGAATTAA GAAAATCAGA TCAGATAATG CTCAACATGA GTGTCTCCAT 
    ATGAGAAATT ATTTGGTGAA AAATCTTTTG GTGAATATGA TGGATAAGAT 
    TTTCATTGTG GATATTTAGT ATCTCAGATT GAATAACCTT ATCACTTGAT 
    CACACAAGCA TATTCAAAAG CACTCTCATG TGGCCATCAT TGATGCCCCA 
    ATCATCAAAA CCAAGCAGAG AATTTTGAGA CCACCTGATC AGGTAGCAAG 
    TTCCAGCTTA GCTGCTTAGG ATAGATATGT CAGGAAGAAG CAGCCAGTAT 
    CTTTCTAGAT GATTTTGATT TCATCCAGAT CCAGTTCACG CAGCAAACAA 
    AGTCTTCCAT ATGCACCGTA TGTGGCATCG ACAAAAAATA AGTATCCCAC 
    CTGCCATTCT TATGGACCAC TGGACATGCC TCCCTTCTTT AGCGTTATTT 
    GGCTGCTTGG AGCCTGCTTA CTTAGTGGAC TGTTTGGGGA GCTCCTTGCT 
    AAGGGTGCAA GGGGATTCTC TTCCTATTCC TCGACTAAAT CCTTTCTGCT 
    GATCTGTTAA AAAAAAATAG TATCTATTTC CGTTTGCCTT TCCTAGAAGG 
    TTGTTCAAAT GTTTGTAGAG ATATTCTTCT TGTCATGGTC TTTTTGTTTC 
    TGTACTCTTT TTAATGGGAT TTTTTTTTTT CAGTCCACAG CTTATATGTA 
    TTGAGCTGAA AGAGAAATTC ATTTTGTTCA TTGAAATGTG GAAGTAATAT 
    TCGTACAATG AATATTTGAA ATCCCCTAGG GGGAAAGGGC CGTAATAAAT 
    ATAACTCCTC CATTCCAAAT TTAAGGCATT TTAGTTTTGT CCTAGGTGAA 
    CATCTCTAAC TCTGACCAAG TTATAGAAAA ATGCACTAAC ATCTAAAACA 
    TCAATTTAAT TTCATTGAAA TCCACCATGA AATATGTATT GATAGTGCAT 
    TAATTGGGTA CTCCATCCCA TTAAACAAGG CGCAACTGCT TTGTACGCAA 
    AGACCAAGGA AGCTCATGTA ACTTGTGAGA TGGATGCTGC AGAACTAGAG 
    GCTTTAAACA ACCAAAGGAA ACCAAAGAAT AGCTAGTGCA TGCATGCGCA 
    TGAACAGAAA TTACAGGAGT CAAGAAGGTG CAGCTGCCGT TGCTGCCCTA 
    TATTCTGGGA CTTTTGAAAA AAGCAGTTGC GTCTGGTATA ATGGGATGGA 
    GAGAGTAGTG TAGATGTTAA TATAGGGCCA ATTTGGATTG CTACCTACCA 
    AAATTTTGGT AGGGTAGCAA ACCAAACACC TCTATTAAAA CACTACCTTT 
    GTCATAAATT TGGCTTTGCC CATGAACTTG TGTCTTATGG GTATATTTTA 
    GCTTCAATCC TAATCAACAT TTTCAACTCT TTACCCTACA ACATTTTGGT 
    AGGGTATTAA TACAAACACA GGCCCATATT TTTCTATAAA CTTGGTCAAG 
    GTTTGAGAAG TTTGACTTAT AACAAAACTA AAATGTCTTA TAGTAGTATG 
    GAATGGAGGG AGTACATGAC TCTAGGTTAA ACTATTCGTT GATGATTGCA 
    GTTTTGAGAA TTATAACACA TTTCTCCATT TGTAGTTTTG TACCATAAAT 
    TCCCTCTGCC TTTTGCAGCT ATGACTATTA TGTGAAATAT TGCAGGTTCT 
    TTTGTTGTGC GCATAAAAAC ATGAGCTGCA GATTTTATGC CTGCTTGTTC 
    GATCAAGCGG TTTGAACATT AAAGAGTGCA AGCACGCAAT AGCCTGGGAA 
    ATACGCCTTG TAGCTGCTCC TTTTTCTTTC TCTTTGTTCT TAGAGGCACC 
    TCTTTACTTA CTGACTTCAT CATACCTTCC TTTGTGCACA TCTTAAGATT 
    GGGTGTAATT TTGTGATTCG TGTGAACAAG AGAAGACAAA ATGTAATATT 
    TCTCCTGAGA TACTGGCTAG AGCCATGTAA TTTTGTTGTC TAGCAGTGGA 
    GAATGTTTTA TCTTGTATGT GATGCCCGCG CACAGTCACG ATTT

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 1e-70; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1.3e-67
    HMMPfam Transport protein particle (TRAPP) component 2.7e-37

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR