K37218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37218

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37218

Determination of introduced cDNA(s)

  • J033029I23 - Rice Full-length cDNAs - Original: J033029I23

    full reading [+] show sequence

    Nucleotide sequence: J033029I23 - full reading 
    GAAAATCCCA CCCTCCGCCA TGCCTCGCCT CCACCTCCTC CTCCTCGCCG 
    TCCTCGCCGT CGCCGCCGCG GCGGCGGAAG CGGCGGCGGA GAAGAAGCCG 
    ACGGCGTACG AGGTCCTGGA GTCCTACGAC TTCCCCGTCG GCATCCTCCC 
    CAAGGGGGTC ACCTCCTACA CGCTCGAGGC CACCACGGGC GACTTCACGG 
    CGACGCTCGA CACCGGCGAC GACGACGACT CATCCTCCTC CACCTGCGAG 
    TTCGCCATCG AGGGCTCCTA CTCGCTCCGC TACCAGCGCG CCATCACCGG 
    CCGCATCGCC ACGGGGCACC TCACCGACCT CCGCGGCGTC GCCGTCAAGG 
    TCCTCTTCTT CTGGCTCAAC ATCGTCGAGG TCACCCGCCG CGGGGACCGC 
    CTCGAGTTCT CCGTCGGCAT CGCCTCCGCC GACTTCACCG TCGACAACTT 
    CCTCGAGTCC CCGCAGTGCG GCTGCGGCTT CGACTGCGAC GACGACGGCA 
    TCTCCTCCTC CTCGTCCCTC CCGCCGCCGC TCGAGCCCAG CCTGCTGCGA 
    CTGCGAGGTG CGTTCTAGAA TCCCCATCCT TCCTCCAACC CAATCTGCGA 
    TGACGTCATC AATGGGGAGC TCTATTAATT ACTGTTGGTA CTAGTACTAG 
    AAATGATTCC CAATTAACTG TCTAAATAAG ACGCAAGTGT CCCCAGCTTT 
    TAGATGGGAC TCTCACGAGT TCAGAACACC ATTTCATTCT CATATGTATG 
    GGTGGGGTCT TGTATTGTAC TCTATCAAGG CAGTTCATAA ATAGTATGAA 
    ATTGGGATCA ATAACGAAGT CTTCTTCAGT TCACAACTCG TTTGAGGTTC 
    TCCCTGTTCT GTAACCTGCA ACTTTTAGCA AAAACTTGCA GTGTTGGATG 
    T

    Gene models with high sequence identity

    1. AT1G02816.1 [+] show detail - Protein of unknown function, DUF538
      E-value: 3e-29; Score: 125.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Protein of unknown function DUF538 1.3e-28
    FPrintScan PRICHEXTENSN 7e-10
    FPrintScan PRICHEXTENSN 7e-10
    FPrintScan PRICHEXTENSN 7e-10
    FPrintScan PRICHEXTENSN 7e-10
    FPrintScan PRICHEXTENSN 7e-10
    FPrintScan PRICHEXTENSN 7e-10
    HMMPfam Protein of unknown function DUF538 5.2e-43

    See the detailed result >

    AT1G02816.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF538
    Computational Description
    Protein of unknown function, DUF538; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT4G02370.1); Has 559 Blast hits to 558 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR