K37221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37221

Determination of introduced cDNA(s)

J023028B05 - Rice Full-length cDNAs - Original: J023028B05

full reading [+] show sequence

GTACTGTTCC CCCATCCCTT CTCTTCCTTT CCCTTGCCCT TGCGCCGCCG 
CCGCTTTGCC TTCTCCTCGC CGGCGACGAC GGCTTGCCCC TCGAGCTTTT 
TTGCCGTCCA TCACGCGAGG GTGGACGGGG GAGTTAACTT TTGGCTGCCC 
TCTACTGCCA TCCAAAAACC CTAGCCGCAC CGAAGTCGCC GCCTCCTCAC 
AAACTCCTCT GCGCGTTCTC CTTCGTCCAG GCGCTGCTGT GGTCGTTGGT 
GAATCGTCGA CGCCGTGGTG AACCTGCGGA GGGACCAGAC CACGTGGGGC 
TCGGGGCGAG GTTTGGCCGT GACGCCTGTC GTCGCTTCGT CGCCCTCCCC 
CTGCCCAATC TCTCCATCTC TCTTCCCAGT TAAGCAGGGA GAGTGGTCAT 
GATGCAGAAC GAGGGCGAGA GGGTCGATCT GCTGGCCCTG CCACTCGATC 
CGGTGGGTAG ACGCCGGCCT CCCCCTCCTG CGCTTTTCCT CGCCGCCAAC 
GCCCTCCCTT CCCCCAACAC ACACACACAC ACACCATAAT AATACTACTC 
CTCTCTCTTC CCAGTTCAAG TAGGGGTGGT GGTGATGGAG ATCAACCAGG 
GCTGCTGGTG ATGGAGAACG ACAACGAGGT GATCGATCTG CTGGCCTATC 
GCTAGATCCG GTGGGTACAT GCACTCAAGT TCGCCATGAA GCCGATGCAA 
TCCTTCTCCA TCTCCACAGT GGGTTGGCGC CCTTCTGCTC AAGTTTGAAG 
CTCCGCTGCC GTGCGGCGCC GACACTGTTT CGCAATTGCA GATCTGGCTA 
GCAACAGGTA ATCTGGGAAC CATCTGTCGT CGCCTAGCCA AGGGCCATTT 
GCAATTGCCT TGCCATTGTT ATTTATGGTG TAATTTACTT AGGGGCAATG 
GATGTATGCA ACTTCATCAT TAATTGAGAA TCCATATGTA TAGGTATTTT 
GGGAACCTTT TTTTTTTTGC CTTTTCCTAC TTCCACTTCA ATTTTACTAG 
GTGATATTTT AGTTCCACAA TGGTTCACCT TGAACTCTTT TTCTAAATGA 
CGATCATATT TAACGAAACC TTCACTGCAT GTTCTGATAT GATTGCTCGC 
CATCATCTCA GCCACTATCT CAAATTGCTT ATTACAGTGG TCGGAGGTAT 
GATATTTTGC ATGCCTCTTA CAAGTAATGC TATGGCCTAT GTAAATGTCT 
GCAAGACTAC AAGGAATCTA TGAATCTATC CTGCTCTGCT GAGGGATTCT 
TTATTTTAGT ACAGTAGAGA ACTGAGATCA GTGCAAATCG AGGTAATTGA 
TGTTTACTCT CACTTACTAC ACATTTTATT TGTTGATTCA CATTACATAT 
ATGCTTCTTT CAAAGAAATG AATGTCCCCG TTTATTAGAG ATTGTTTAGG 
GGGGAGTTGT TTTCTAAATG CCTTTGTGCT TCATTTACAT AAGCAAATGT 
TTATTAGTGT TGATGCTTCT AGCTACATGG TTGACAACAT ATAAAGATTA 
CCTTGCACAT AATGAAACTG AATTGGCTCT TTTTTTTTTC CTAAAGAAAC 
TGAATGGGCT AGACCTATTT TCGTATACAT TGATATATTC CATTAATTGC 
ATTTTCAAGT ATACACTTAT ATTGGTTTCT AGACTTGATA CTTGCTTACT 
AAAGGTTTCT GGACTTGATA CTTGCTCACT AAAGGATTTT ATATTGCAGA 
ATTCAGGCTC TATTTCTGCT CCTTAACATC AGAATTGAAG TTATGTGGCA 
GATTGTGTTA GAACAAAAAC CTTCAGAGAA GCTCAACATT TACTAATAGA 
AGTACGTTTT TGGACTTGTG ATGCTTCTGG TGAGGTTTTT GGACTAGACC 
AACCAATAGC ATTTAGGTTG TTGGGCTCGG TGAGATCATT ACAAGCACTT 
GAAGGTGTGG CTAAGTAATT GGATGATTCA CTGTGGTGCT GATGCAAGTC 
AGCATTGGTA GTCTTTGAAG ATGCAGAATG AACTCTACTA ATTTAGGGCT 
AAGCCATGCT GATTTAAACT GATATATATT TAGTGCTCCT ATAGCAATTG 
GTGAAGAAAT TGTGTGGAAG TTTCTGTTAA AATGATGAAA TTAAGAACAT 
GTTTGGTAAT ATATAAATAC TATAGATTGG ATCTGAAACG TGTTGTGGTG 
AGCTATGGCA CAAAATCCTC TTTCCATG

Gene models with high sequence identity

AT5G58330.3 [+] show detail - lactate/malate dehydrogenase family protein
E-value: 0.00000001; Score: 59.30

InterPro Scan Digest

See the detailed result >

AT5G58330.3

Model type: Protein coding
Short Description: lactate/malate dehydrogenase family protein
Computational Description: lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, mitochondrion, apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NADP-dependent, plants (InterPro:IPR011273), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G56720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR